Debian changelog in Git: unanimity (3.4.1+git20180307.02aa264+dfsg-1) UNRELEASED; urgency=medium
* Afif removed himself from Uploaders (thanks for your previous work, Afif)
* New upstream version
Attention: This is the last release of unanimity obtained from Git
(see README.source)
Closes: #939506
* debhelper-compat 12
* Standards-Version: 4.4.1
* Use 2to3 to port from Python2 to Python3
Closes: #938751
* debian/copyright: use spaces rather than tabs to start continuation
lines.
TODO:
1. With latest libpbcopper:
[ 56%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o
cd /build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/src && /usr/bin/c++ -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/include -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/generated -I/ build/unanimity-3.4.1+git20180307.02aa264+dfsg/src -g -O2 -fdebug-prefix-map=/build/unanimity-3.4.1+git20180307.02aa264+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time - D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o -c / build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp
In file included from /usr/include/pbcopper/data/ReadId.h:13,
from /usr/include/pbcopper/data/Read.h:19,
from /usr/include/pbcopper/data/MappedRead.h:10,
from /usr/include/pbbam/BamRecord.h:19,
from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/IPoaModel.h:8,
from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/arrow/ArrowModel.h:5,
from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp:8:
/usr/include/pbcopper/data/Interval.h:24:7: error: redefinition of ‘class PacBio::Data::Interval’
24 | class Interval
| ^~~~~~~~
In file included from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/ReferenceWindow.h:10,
from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/Consensus.h:10,
from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/WindowResult.h:7,
from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/IConsensusModel.h:5,
from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/genomicconsensus/experimental/ConsensusModelFactory.h:9,
from /build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp:3:
/build/unanimity-3.4.1+git20180307.02aa264+dfsg/include/pacbio/data/Interval.h:20:7: note: previous definition of ‘class PacBio::Data::Interval’
20 | class Interval
| ^~~~~~~~
make[3]: *** [src/CMakeFiles/unanimity.dir/build.make:79: src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o] Error 1
--> The definition in /include/pacbio/data/Interval.h is NOT good - we need the one of include/pacbio/data/Interval.h !
2. If 1. is solved
[ 90%] Building CXX object src/CMakeFiles/ccs.dir/main/ccs.cpp.o
cd /build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/src && /usr/bin/c++ -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/include -I/build/unanimity-3.4.1+git20180307.02aa264+dfsg/build/generated -I/ build/unanimity-3.4.1+git20180307.02aa264+dfsg/src -g -O2 -fdebug-prefix-map=/build/unanimity-3.4.1+git20180307.02aa264+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time - D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/ccs.dir/main/ccs.cpp.o -c /build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/main/ccs.cpp
/build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/main/ccs.cpp: In function ‘int Runner(const PacBio::CLI::Results&)’:
/build/unanimity-3.4.1+git20180307.02aa264+dfsg/src/main/ccs.cpp:571:38: error: ‘move’ was not declared in this scope
571 | read.Sequence(), move(ipd), move(pw), read.LocalContextFlags(),
| ^~~~
-- Andreas Tille <tille@debian.org> Thu, 19 Dec 2019 08:17:37 +0100