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component: main
debian_mangled_uversion: 3.5.0
debian_uversion: 3.5.0+dfsg
distribution: debian
last_check: 2025-12-13 03:50:26.437894
metadata: Bug-Database: https://github.com/Gaius-Augustus/Augustus/issues Bug-Submit: https://github.com/Gaius-Augustus/Augustus/issues/new Reference: - Author: Stefanie König and Lars Romoth and Lizzy Gerischer and Mario Stanke Title: "Simultaneous gene finding in multiple genomes" Journal: Bioinformatics Year: 2016 Month: 11 Volume: 32 Number: 22 Pages: 3388-3395 DOI: 10.1093/bioinformatics/btw494 PMID: 27466621 eprint: https://academic.oup.com/bioinformatics/article-pdf/32/22/3388/24342995/btw494.pdf - Author: Oliver Keller and Martin Kollmar and Mario Stanke and Stephan Waack Title: > "A novel hybrid gene prediction method employing protein multiple sequence alignments" Year: 2011 Journal: Bioinformatics Volume: 27 Number: 6 Month: 3 Pages: 757–763 DOI: 10.1093/bioinformatics/btr010 eprint: https://academic.oup.com/bioinformatics/article-pdf/27/6/757/16902282/btr010.pdf PMID: 21216780 - Author: > Mario Stanke and Mark Diekhans and Robert Baertsch and David Haussler Title: > "Using native and syntenically mapped cDNA alignments to improve de novo gene finding" Year: 2008 Journal: Bioinformatics Volume: 24 Number: 5 Month: 3 Pages: 637–644 DOI: 10.1093/bioinformatics/btn013 eprint: https://academic.oup.com/bioinformatics/article-pdf/24/5/637/16886735/btn013.pdf PMID: 18218656 - Author: > Mario Stanke and Oliver Schöffmann and Burkhard Morgenstern and Stephan Waack Title: > Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources Journal: BMC Bioinformatics Year: 2006 Month: 2 Volume: 7 Pages: 62 DOI: 10.1186/1471-2105-7-62 PMID: 16469098 eprint: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-7-62 - Author: Mario Stanke and Stephan Waack Title: Gene Prediction with a Hidden-Markov Model and a new Intron Submodel Year: 2003 Journal: Bioinformatics Volume: 19 Number: Suppl. 2 Month: 9 Pages: ii215–ii225 eprint: https://academic.oup.com/bioinformatics/article-pdf/19/suppl_2/ii215/435390/btg1080.pdf PMID: 14534192 DOI: 10.1093/bioinformatics/btg1080 - Author: Mario Stanke Year: 2003 Title: "Gene Prediction with a Hidden Markov Model" Volume: Ph.D. dissertation Publisher: Universität Göttingen URL: http://ediss.uni-goettingen.de/handle/11858/00-1735-0000-0006-B3F8-4 eprint: http://ediss.uni-goettingen.de/bitstream/handle/11858/00-1735-0000-0006-B3F8-4/stanke.pdf Registry: - Name: SciCrunch Entry: SCR_008417 - Name: OMICtools Entry: OMICS_07777 - Name: bio.tools Entry: AUGUSTUS - Name: conda:bioconda Entry: augustus Repository: https://github.com/Gaius-Augustus/Augustus.git Repository-Browse: https://github.com/Gaius-Augustus/Augustus
release: sid
source: augustus
status: up to date
upstream_url: https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v3.5.0.tar.gz
upstream_version: 3.5.0
version: 3.5.0+dfsg-5
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