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component: main
debian_mangled_uversion: 2.2
debian_uversion: 2.2+dfsg
distribution: debian
last_check: 2025-12-12 08:20:35.321271
metadata: Bug-Database: https://github.com/marbl/canu/issues Bug-Submit: https://github.com/marbl/canu/issues/new Reference: # For 'standard' assemblies of PacBio or Nanopore reads - Author: > Sergey Koren and Brian P. Walenz and Konstantin Berlin and Jason R. Miller and Adam M. Phillippy Title: > Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Journal: Genome Res. Year: 2017 DOI: 10.1101/gr.215087.116 URL: https://doi.org/10.1101/gr.215087.116 # Read and contig alignments during correction and consensus use - Author: > Martin Šošić and Mile Šikić Title: > Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance Journal: Bioinformatics Year: 2017 DOI: 10.1093/bioinformatics/btw753 URL: https://doi.org/10.1093/bioinformatics/btw753 # Overlaps are generated using - Author: > Konstantin Berlin and Sergey Koren and Chen-Shan Chin and James P Drake and Jane M Landolin and Adam M Phillippy Title: > Assembling large genomes with single-molecule sequencing and locality-sensitive hashing Journal: Nat Biotechnol. Year: 2015 DOI: 10.1038/nbt.3238 URL: https://doi.org/10.1038/nbt.3238 - Author: > Eugene W. Myers and Granger G. Sutton and Art L. Delcher and Ian M. Dew and Dan P. Fasulo and Michael J. Flanigan and Saul A. Kravitz and Clark M. Mobarry and Knut H. J. Reinert and Karin A. Remington and Eric L. Anson and Randall A. Bolanos and Hui-Hsien Chou and Catherine M. Jordan and Aaron L. Halpern and Stefano Lonardi and Ellen M. Beasley and Rhonda C. Brandon and Lin Chen and Patrick J. Dunn and Zhongwu Lai and Yong Liang and Deborah R. Nusskern and Ming Zhan and Qing Zhang and Xiangqun Zheng and Gerald M. Rubin and Mark D. Adams and J. Craig Venter Title: A Whole-Genome Assembly of Drosophila Journal: Science Year: 2000 DOI: 10.1126/science.287.5461.2196 URL: https://doi.org/10.1126/science.287.5461.2196 # Corrected read consensus sequences are generated using an algorithm derived from FALCON-sense - Author: > Chen-Shan Chin and Paul Peluso and Fritz J Sedlazeck and Maria Nattestad and Gregory T Concepcion and Alicia Clum and Christopher Dunn and Ronan O'Malley and Rosa Figueroa-Balderas and Abraham Morales-Cruz and Grant R Cramer and Massimo Delledonne and Chongyuan Luo and Joseph R Ecker and Dario Cantu and David R Rank and Michael C Schatz Title: > Phased diploid genome assembly with single-molecule real-time sequencing Journal: Nat Methods Year: 2016 DOI: 10.1038/nmeth.4035 URL: https://doi.org/10.1038/nmeth.4035 # Contig consensus sequences are generated using an algorithm derived from pbdagcon - Author: > Chen-Shan Chin and David H Alexander and Patrick Marks and Aaron A Klammer and James Drake and Cheryl Heiner and Alicia Clum and Alex Copeland and John Huddleston and Evan E Eichler and Stephen W Turner and Jonas Korlach Title: > Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data Journal: Nat Methods Year: 2013 DOI: 10.1038/nmeth.2474 URL: https://doi.org/10.1038/nmeth.2474 Registry: - Name: OMICtools Entry: OMICS_14592 - Name: SciCrunch Entry: SCR_015880 - Name: bio.tools Entry: CANU - Name: conda:bioconda Entry: canu Repository: https://github.com/marbl/canu.git Repository-Browse: https://github.com/marbl/canu
release: sid
source: canu
status: newer package available
upstream_url: https://github.com/marbl/canu/releases/download/v2.3/canu-2.3.tar.xz
upstream_version: 2.3
version: 2.2+dfsg-5
watch_file: 
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