Watch file results
component:
non-free
debian_mangled_uversion:
2.2.1
debian_uversion:
2.2.1+dfsg.1
distribution:
debian
last_check:
2025-12-12 03:20:22.255087
metadata:
Contact: Cole Trapnell
Bug-Database: https://github.com/cole-trapnell-lab/cufflinks/issues
Bug-Submit: https://github.com/cole-trapnell-lab/cufflinks/issues/new
Reference:
- Author: >
Cole Trapnell and Brian A Williams and Geo Pertea and
Ali Mortazavi and Gordon Kwan and Marijke J van Baren and
Steven L Salzberg and Barbara J Wold and Lior Pachter
Title: >
Transcript assembly and quantification by RNA-Seq reveals
unannotated transcripts and isoform switching during cell differentiation
Journal: Nature Biotechnology
DOI: 10.1038/nbt.1621
URL: http://www.nature.com/nbt/journal/v28/n5/full/nbt.1621.html
Year: 2010
PMID: 20436464
Pages: 511-515
Volume: 28
Number: 5
Type: article
- Author: >
Cole Trapnell and Adam Roberts and Loyal Goff and
Geo Pertea and Daehwan Kim and David R Kelley and
Harold Pimentel and Steven L Salzberg and John L Rinn and
Lior Pachter
Title: Differential gene and transcript expression analysis
of RNA-seq experiments with TopHat and Cufflinks.
Journal: Nat. Protocols
Year: 2012
DOI: 10.1038/nprot.2012.016
URL: http://www.nature.com/nprot/journal/v7/n3/full/nprot.2012.016.html
Pages: 562-578
Volume: 7
Number: 8
PMID: 22383036
Type: article
Registry:
- Name: SciCrunch
Entry: SCR_014597
- Name: OMICtools
Entry: OMICS_01304
- Name: bio.tools
Entry: cufflinks
- Name: conda:bioconda
Entry: cufflinks
Repository: https://github.com/cole-trapnell-lab/cufflinks.git
Repository-Browse: https://github.com/cole-trapnell-lab/cufflinks
release:
sid
source:
cufflinks
status:
up to date
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upstream_version:
2.2.1
version:
2.2.1+dfsg.1-10
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