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component: main
debian_mangled_uversion: 3.0.0~a3
debian_uversion: 3.0.0~a3+dfsg
distribution: debian
last_check: 2025-12-12 02:20:42.726886
metadata: Bug-Database: https://github.com/dib-lab/khmer/issues Bug-Submit: https://github.com/dib-lab/khmer/issues/new Changelog: https://raw.githubusercontent.com/dib-lab/khmer/master/ChangeLog Funding: > AFRI Competitive Grant no. 2010-65205-20361 from the USDA NIFA, National Human Genome Research Institute of the National Institutes of Health under Award Number R01HG007513 Reference: - Author: > Crusoe, Michael R. and Alameldin, Hussien F. and Awad, Sherine and Bucher, Elmar and Caldwell, Adam and Cartwright, Reed and Charbonneau, Amanda and Constantinides, Bede and Edvenson, Greg and Fay, Scott and Fenton, Jacob and Fenzl, Thomas and Fish, Jordan and Garcia-Gutierrez, Leonor and Garland, Phillip and Gluck, Jonathan and González, Iván and Guermond, Sarah and Guo, Jiarong and Gupta, Aditi and Herr, Joshua R. and Howe, Adina and Hyer, Alex and Härpfer, Andreas and Irber, Luiz and Kidd, Rhys and Lin, David and Lippi, Justin and Mansour, Tamer and McA'Nulty, Pamela and McDonald, Eric and Mizzi, Jessica and Murray, Kevin D. and Nahum, Joshua R. and Nanlohy, Kaben and Nederbragt, Alexander Johan and Ortiz-Zuazaga, Humberto and Ory, Jeramia and Pell, Jason and Pepe-Ranney, Charles and Russ, Zachary N and Schwarz, Erich and Scott, Camille and Seaman, Josiah and Sievert, Scott and Simpson, Jared and Skennerton, Connor T. and Spencer, James and Srinivasan, Ramakrishnan and Standage, Daniel and Stapleton, James A. and Stein, Joe and Steinman, Susan R and Taylor, Benjamin and Trimble, Will and Wiencko, Heather L. and Wright, Michael and Wyss, Brian and Zhang, Qingpeng and zyme, en and Brown, C. Titus Title: > The khmer software package: enabling efficient sequence analysis Publisher: F1000Research Year: 2015 DOI: 10.12688/f1000research.6924.1 URL: http://dx.doi.org/10.12688/f1000research.6924.1 Type: article - Author: > Pell, Jason and Hintze, Arend and Canino-Koning, Rosangela and Howe, Adina and Tiedje, James M. and Brown, C. Titus title: > Scaling metagenome sequence assembly with probabilistic de Bruijn graphs Volume: 109 Number: 33 Pages: 13272-13277 Year: 2012 DOI: 10.1073/pnas.1121464109 Eprint: http://www.pnas.org/content/109/33/13272.full.pdf Journal: Proceedings of the National Academy of Sciences Type: article URL: http://www.pnas.org/content/109/33/13272 - Author: > C. Titus Brown and Adina Howe and Qingpeng Zhang and Alexis B. Pyrkosz and Timothy H. Brom Title: > A Reference-Free Algorithm for Computational Normalization of Shotgun Sequencing Data Year: 2012 url: http://arxiv.org/abs/1203.4802 Eprint: http://arxiv.org/pdf/1203.4802v2 - Author: Zhang, Qingpeng AND Pell, Jason AND Canino-Koning, Rosangela AND Howe, Adina Chuang AND Brown, C. Titus Journal: PLoS ONE Title: > These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure Year: 2014 Month: 07 Volume: 9 DOI: 10.1371/journal.pone.0101271 Number: 7 Type: article Eprint: "http://www.plosone.org/article/fetchObject.action?uri=info:doi/\ 10.1371/journal.pone.0101271&representation=PDF" - Author: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut Title: SeqAn An efficient, generic C++ library for sequence analysis Journal: BMC Bioinformatics Volume: 9 Year: 2008 Number: 1 Pages: 11 Type: article DOI: 10.1186/1471-2105-9-11 PMID: 18184432 ISSN: 1471-2105 - Author: Qingpeng Zhang and Sherine Awad and C. Titus Brown Title: > Crossing the streams: a framework for streaming analysis of short DNA sequencing reads Year: 2015 eprint: PeerJ Preprints 3:e1100 url: https://dx.doi.org/10.7287/peerj.preprints.890v1 Repository-Browse: https://github.com/dib-lab/khmer Repository: https://github.com/dib-lab/khmer.git Registry: - Name: SciCrunch Entry: SCR_001156 - Name: bio.tools Entry: khmer - Name: OMICtools Entry: OMICS_02560 - Name: conda:bioconda Entry: khmer
release: experimental
source: khmer
status: up to date
upstream_url: https://github.com/dib-lab/khmer/archive/refs/tags/v3.0.0a3.tar.gz
upstream_version: 3.0.0a3
version: 3.0.0~a3+dfsg-9~0exp
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