Watch file results
component: main
debian_mangled_uversion: 2.0.8
debian_uversion: 2.0.8+dfsg
distribution: debian
last_check: 2025-12-12 05:21:46.930944
metadata: Bug-Database: https://sourceforge.net/p/subread/bugs/ Bug-Submit: https://support.bioconductor.org/ Changelog: https://subread.sourceforge.net/ Documentation: https://subread.sourceforge.net/SubreadUsersGuide.pdf Archive: SourceForge Reference: - # If you use Rsubread, you can cite: Author: Yang Lian and Gordon K. Smyth and Wei Shi Title: The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads Journal: Nucleic Acids Research Year: 2019 Volume: 47 Number: 8 Pages: e47-e47 DOI: 10.1093/nar/gkz114 PMID: 30783653 URL: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/30783653/ - # If you use Subread or Subjunc aligners, you can cite: Author: Yang Lian and Gordon K. Smyth and Wei Shi Title: | The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote Journal: Nucleic Acids Research Year: 2013 Volume: 41 Number: 10 Pages: e108–e108 DOI: 10.1093/nar/gkt214 PMID: 23558742 URL: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23558742/ Publisher: Oxford University Press (OUP) Type: article - # If you use featureCounts, you can cite: Author: Yang Lian and Gordon K. Smyth and Wei Shi Title: | featureCounts: an efficient general purpose program for assigning sequence reads to genomic features Journal: Bioinformatics Year: 2014 Volume: 30 Number: 7 Pages: 923–930 DOI: 10.1093/bioinformatics/btt656 PMID: 24227677 URL: https://academic.oup.com/bioinformatics/article/30/7/923/232889? - # If you use Rsubread inbuilt annotations, you can cite: Author: David Chisanga and Yang Liao and Wei Shi} Title: Impact of gene annotation choice on the quantification of RNA-seq data Journal: BMC Bioinformatics Year: 2022 Volume: 23 Number: 1 DOI: 10.1186/s12859-022-04644-8 PMID: 35354358 URL: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/35354358/ Registry: - Name: OMICtools Entry: OMICS_01255 - Name: SciCrunch Entry: SCR_009803 - Name: bio.tools Entry: subread - Name: conda:bioconda Entry: subread
release: sid
source: subread
status: newer package available
upstream_url: https://qa.debian.org/watch/sf.php/subread/subread-2.1.1-source.tar.gz
upstream_version: 2.1.1
version: 2.0.8+dfsg-1
watch_file:
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