Automated Code Analysis

cppcheck analysis of ball_1.3.2-2.dsc

• ./source/APPLICATIONS/MMFF94/readMMFF94TestFile.C:1005 [error] - Memory leak: system
• ./source/APPLICATIONS/MMFF94/readMMFF94TestFile.C:1190 [error] - Memory leak: system
• ./source/BENCHMARKS/AmberFF_bench.C:30 [error] - syntax error
• ./source/BENCHMARKS/CharmmFF_bench.C:36 [error] - syntax error
• ./source/BENCHMARKS/CompositeClone_bench.C:23 [error] - syntax error
• ./source/BENCHMARKS/CompositeCreation_bench.C:28 [error] - syntax error
• ./source/BENCHMARKS/ContourSurface_bench.C:26 [error] - syntax error
• ./source/BENCHMARKS/DataStructures_bench.C:47 [error] - syntax error
• ./source/BENCHMARKS/FragmentDB_bench.C:26 [error] - syntax error
• ./source/BENCHMARKS/KernelClone_bench.C:30 [error] - syntax error
• ./source/BENCHMARKS/KernelCreation_bench.C:29 [error] - syntax error
• ./source/BENCHMARKS/KernelIteration_bench.C:28 [error] - syntax error
• ./source/BENCHMARKS/PDB_bench.C:23 [error] - syntax error
• ./source/COMMON/logStream.C:179 [error] - Uninitialized variable: buffer
• ./source/FORMAT/PDBFileDetails.C:81 [style] - The iterator incrementing is suspicious - it is incremented at line 81 and then at line 78 The loop might unintentionally skip an element in the container. There is no comparison between these increments to prevent that the iterator is incremented beyond the end.
• ./source/SOLVATION/poissonBoltzmann.C:2063 [error] - Memory leak: T
• ./source/SOLVATION/poissonBoltzmann.C:1918 [error] - Memory leak: Q
• ./source/SOLVATION/poissonBoltzmann.C:1973 [error] - Memory leak: tmp_phi
• ./source/SOLVATION/poissonBoltzmann.C:2069 [error] - Memory leak: charged_black_points
• ./source/SYSTEM/file.C:375 [error] - Memory leak: buffer
• ./source/SYSTEM/sysinfo.C:209 [error] - Mismatching allocation and deallocation: st
• ./source/SYSTEM/sysinfo.C:196 [error] - Memory leak: st
• ./source/TEST/AnalyticalGeometry_test.C:41 [error] - syntax error
• ./source/TEST/AssignBondOrderProcessor_test.C:1263 [error] - syntax error
• ./source/TEST/Atom_test.C:518 [error] - syntax error
• ./source/TEST/BitVector_test.C:257 [error] - syntax error
• ./source/TEST/Bond_test.C:91 [error] - syntax error
• ./source/TEST/CharmmFF_test.C:639 [error] - syntax error
• ./source/TEST/CompositeCompositeIteratorTraits_test.C:246 [error] - syntax error
• ./source/TEST/Composite_test2.C:664 [error] - syntax error
• ./source/TEST/ConnectivityDescriptors_test.C:66 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/ContourSurface_test.C:38 [error] - syntax error
• ./source/TEST/DCDFile_test.C:190 [error] - syntax error
• ./source/TEST/DefaultProcessors_test.C:235 [error] - syntax error
• ./source/TEST/Descriptors_test.C:66 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/EnumeratorIndex_test.C:163 [error] - syntax error
• ./source/TEST/Enumerator_test.C:76 [error] - syntax error
• ./source/TEST/HashGridBox3_test.C:40 [error] - syntax error
• ./source/TEST/HashMap_test.C:166 [error] - Invalid iterator: it1
• ./source/TEST/HashSet_test.C:587 [error] - Invalid iterator: it1
• ./source/TEST/INIFile_test.C:94 [error] - syntax error
• ./source/TEST/MOL2File_test.C:201 [error] - syntax error
• ./source/TEST/Matrix44_test.C:123 [error] - syntax error
• ./source/TEST/NumericalSAS_test.C:94 [error] - syntax error
• ./source/TEST/PreciseTime_test.C:155 [error] - syntax error
• ./source/TEST/RMSDMinimizer_test.C:105 [error] - syntax error
• ./source/TEST/RandomNumberGenerator_test.C:55 [error] - syntax error
• ./source/TEST/ReconstructFragmentProcessor_test.C:104 [error] - syntax error
• ./source/TEST/RegularData2D_test.C:256 [error] - syntax error
• ./source/TEST/RegularData3D_test.C:334 [error] - syntax error
• ./source/TEST/Selectable_test.C:111 [error] - Throwing exception in invalid state, s points at deallocated memory
• ./source/TEST/ShiftModel_test.C:72 [error] - Throwing exception in invalid state, sm points at deallocated memory
• ./source/TEST/SimpleDescriptors_test.C:58 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:437 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:458 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:499 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:584 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:605 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:626 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:709 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:731 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:773 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:794 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:815 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/SimpleDescriptors_test.C:836 [error] - Array 'results[9]' index 9 out of bounds
• ./source/TEST/StringHashMap_test.C:264 [error] - syntax error
• ./source/TEST/String_test1.C:34 [error] - Throwing exception in invalid state, s points at deallocated memory
• ./source/TEST/String_test1.C:105 [error] - Throwing exception in invalid state, s2 points at deallocated memory
• ./source/TEST/String_test2.C:226 [error] - syntax error
• ./source/TEST/String_test4.C:533 [error] - Throwing exception in invalid state, s2 points at deallocated memory
• ./source/TEST/SurfaceDescriptors_test.C:39 [error] - syntax error
• ./source/TEST/Surface_test.C:315 [error] - syntax error
• ./source/TEST/Timer_test.C:161 [error] - syntax error
• ./source/TEST/Vector2_test.C:264 [error] - Division by zero
• ./source/TEST/Vector3_test.C:355 [error] - Division by zero
• ./source/TEST/Vector4_test.C:307 [error] - Division by zero
• ./source/VIEW/DIALOGS/dockDialog.C:133 [error] - Dangerous iterator usage. After erase the iterator is invalid so dereferencing it or comparing it with another iterator is invalid.

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