Automated Code Analysis

cppcheck analysis of wise_2.4.1-8.dsc

• ./src/HMMer2/cluster.c:345 [error] - Memory leak: tree
• ./src/HMMer2/histogram.c:1249 [error] - Uninitialized variable: total
• ./src/dnaindex/assembly_sanger_project.c:110 [error] - Common realloc mistake: "seqstr" nulled but not freed upon failure
• ./src/dnaindex/vectorindex.c:104 [error] - Memory leak: pos
• ./src/dyc/linkmap.c:21 [error] - Uninitialized variable: buffer
• ./src/dyc/y.tab.c:315 [error] - Array index -1 is out of bounds
• ./src/dyc/y.tab.c:316 [error] - Array index -1 is out of bounds
• ./src/dynlibsrc/histogram.c:1100 [error] - Uninitialized variable: total
• ./src/dynlibsrc/hsplookupthreaded.c:236 [error] - Common realloc mistake: "oph" nulled but not freed upon failure
• ./src/dynlibsrc/hsplookupthreaded.c:237 [error] - Common realloc mistake: "pos" nulled but not freed upon failure
• ./src/dynlibsrc/hsplookupthreaded.c:320 [error] - Memory leak: position
• ./src/dynlibsrc/hsplookupthreaded.c:320 [error] - Memory leak: seqnumber
• ./src/models/abc.c:1138 [error] - Possible null pointer dereference: out
• ./src/models/aligngenemodel.c:525 [error] - Memory leak: should_show
• ./src/models/aligngenemodel.c:525 [error] - Memory leak: phase_array
• ./src/models/alignwisedp.c:1465 [error] - Possible null pointer dereference: out
• ./src/models/bigdba.c:1333 [error] - Possible null pointer dereference: out
• ./src/models/cdnawise10.c:1788 [error] - Possible null pointer dereference: out
• ./src/models/clonewisedp.c:1245 [error] - Possible null pointer dereference: out
• ./src/models/dba.c:1217 [error] - Possible null pointer dereference: out
• ./src/models/dbac.c:327 [error] - Memory leak: xSeq
• ./src/models/dbac.c:327 [error] - Memory leak: ySeq
• ./src/models/dnaalign.c:1259 [error] - Possible null pointer dereference: out
• ./src/models/dnaprofiledp.c:1331 [error] - Possible null pointer dereference: out
• ./src/models/editdistdp.c:1000 [error] - Possible null pointer dereference: out
• ./src/models/estfrag3.c:1412 [error] - Possible null pointer dereference: out
• ./src/models/estloop3.c:1779 [error] - Possible null pointer dereference: out
• ./src/models/estquick3.c:1181 [error] - Possible null pointer dereference: out
• ./src/models/estslim3.c:1285 [error] - Possible null pointer dereference: out
• ./src/models/estslimloop.c:1505 [error] - Possible null pointer dereference: out
• ./src/models/estwise3.c:1573 [error] - Possible null pointer dereference: out
• ./src/models/fivestate.c:1284 [error] - Possible null pointer dereference: out
• ./src/models/geneloop21.c:3063 [error] - Possible null pointer dereference: out
• ./src/models/geneloop6.c:1712 [error] - Possible null pointer dereference: out
• ./src/models/genephase6.c:2022 [error] - Possible null pointer dereference: out
• ./src/models/genestretch6.c:1809 [error] - Possible null pointer dereference: out
• ./src/models/genewise21.c:3477 [error] - Possible null pointer dereference: out
• ./src/models/genewise4.c:1462 [error] - Possible null pointer dereference: out
• ./src/models/genewise6.c:1612 [error] - Possible null pointer dereference: out
• ./src/models/genewisemodel.c:22 [error] - Uninitialized variable: out
• ./src/models/genomewise9.c:1865 [error] - Possible null pointer dereference: out
• ./src/models/gwlite.c:1533 [error] - Possible null pointer dereference: out
• ./src/models/largeblockdp.c:1032 [error] - Possible null pointer dereference: out
• ./src/models/localcishit.c:462 [error] - Memory leak: forward_used
• ./src/models/localcishit.c:462 [error] - Memory leak: reverse_used
• ./src/models/localclonewisedp.c:1149 [error] - Possible null pointer dereference: out
• ./src/models/localdba.c:1255 [error] - Possible null pointer dereference: out
• ./src/models/mapstruct.c:88 [error] - Memory leak: buffer
• ./src/models/motifmatrixdp.c:944 [error] - Possible null pointer dereference: out
• ./src/models/pba.c:1285 [error] - Possible null pointer dereference: out
• ./src/models/phasemodel.c:195 [error] - Buffer access out-of-bounds: name
• ./src/models/proteinsw.c:1137 [error] - Possible null pointer dereference: out
• ./src/models/pseudowise7.c:1652 [error] - Possible null pointer dereference: out
• ./src/models/scanwisep.c:672 [error] - Memory leak: scani
• ./src/models/scanwisep.c:672 [error] - Memory leak: hsp2hiti
• ./src/models/slimdba.c:917 [error] - Possible null pointer dereference: out
• ./src/models/statwise10.c:762 [error] - Possible null pointer dereference: out
• ./src/models/sywise20.c:1913 [error] - Possible null pointer dereference: out
• ./src/models/threestatedp.c:1038 [error] - Possible null pointer dereference: out
• ./src/models/threestateloop.c:1140 [error] - Possible null pointer dereference: out
• ./src/models/transregiondp.c:1147 [error] - Possible null pointer dereference: out

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