Automated Code Analysis

pyflakes analysis of mmass_3.11.0-2_all.deb

./usr/share/mmass/gui/panel_peaklist.py:1135: invalid syntax
    
     ^
./usr/share/mmass/mmass.py:19: 'config' imported but unused
./usr/share/mmass/mmass.py:20: 'libs' imported but unused
./usr/share/mmass/gui/doc.py:31: 'images' imported but unused
./usr/share/mmass/gui/doc.py:1034: local variable 'modifications' is assigned to but never used
./usr/share/mmass/gui/doc.py:1056: local variable 'matches' is assigned to but never used
./usr/share/mmass/gui/doc.py:1181: local variable 'modifications' is assigned to but never used
./usr/share/mmass/gui/doc.py:1277: local variable 'formula' is assigned to but never used
./usr/share/mmass/gui/images.py:22: 'ids' imported but unused
./usr/share/mmass/gui/images.py:37: redefinition of unused 'images_lib' from line 35
./usr/share/mmass/gui/images.py:39: redefinition of unused 'images_lib' from line 37
./usr/share/mmass/gui/images.py:637: 'PyEmbeddedImage' imported but unused
./usr/share/mmass/gui/panel_processing.py:20: 'numpy' imported but unused
./usr/share/mmass/gui/panel_processing.py:25: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_sequence.py:21: 'numpy' imported but unused
./usr/share/mmass/gui/panel_sequence.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_sequence.py:1151: local variable 'residue' is assigned to but never used
./usr/share/mmass/gui/config.py:1141: local variable 'value' is assigned to but never used
./usr/share/mmass/gui/panel_document_export.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_document_export.py:28: 'mspy' imported but unused
./usr/share/mmass/gui/dlg_select_scans.py:388: undefined name 'random'
./usr/share/mmass/gui/dlg_select_scans.py:388: undefined name 'random'
./usr/share/mmass/gui/dlg_select_scans.py:388: undefined name 'random'
./usr/share/mmass/gui/dlg_enzymes_editor.py:24: 'config' imported but unused
./usr/share/mmass/gui/dlg_enzymes_editor.py:309: local variable 'expr' is assigned to but never used
./usr/share/mmass/gui/main_frame.py:37: 'numpy' imported but unused
./usr/share/mmass/gui/main_frame.py:40: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/dlg_presets_editor.py:24: 'config' imported but unused
./usr/share/mmass/gui/dlg_presets_editor.py:26: 'mspy' imported but unused
./usr/share/mmass/gui/panel_documents.py:22: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_documents.py:199: local variable 'docIndex' is assigned to but never used
./usr/share/mmass/gui/panel_documents.py:200: local variable 'seqIndex' is assigned to but never used
./usr/share/mmass/gui/panel_documents.py:814: local variable 'seqItem' is assigned to but never used
./usr/share/mmass/gui/panel_documents.py:1091: local variable 'seqItem' is assigned to but never used
./usr/share/mmass/gui/dlg_references_editor.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/dlg_references_editor.py:26: 'config' imported but unused
./usr/share/mmass/gui/panel_periodic_table.py:23: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_periodic_table.py:26: 'config' imported but unused
./usr/share/mmass/gui/panel_document_info.py:22: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_document_info.py:25: 'config' imported but unused
./usr/share/mmass/gui/panel_document_info.py:27: 'mspy' imported but unused
./usr/share/mmass/gui/panel_compounds_search.py:20: 'math' imported but unused
./usr/share/mmass/gui/panel_compounds_search.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_compounds_search.py:30: 'doc' imported but unused
./usr/share/mmass/gui/mwx.py:20: 'copy' imported but unused
./usr/share/mmass/gui/mwx.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/mwx.py:755: local variable 'value' is assigned to but never used
./usr/share/mmass/gui/dlg_select_sequences.py:23: 'config' imported but unused
./usr/share/mmass/gui/libs.py:802: local variable 'value./usr/share/mmass/gui/dlg_preferences.py:165: invalid syntax
    
     ^
./usr/share/mmass/mspy/mascot.py:357: invalid syntax
    
     ^
' is assigned to but never used
./usr/share/mmass/gui/panel_match.py:23: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_spectrum_generator.py:21: 'numpy' imported but unused
./usr/share/mmass/gui/panel_mass_filter.py:22: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_mass_filter.py:27: 'mspy' imported but unused
./usr/share/mmass/gui/panel_mascot.py:29: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_mascot.py:34: 'mspy' imported but unused
./usr/share/mmass/gui/panel_mascot.py:35: 'doc' imported but unused
./usr/share/mmass/gui/panel_about.py:22: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_calibration.py:25: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_spectrum.py:20: 'numpy' imported but unused
./usr/share/mmass/gui/panel_spectrum.py:23: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_spectrum.py:520: local variable 'labelFont' is assigned to but never used
./usr/share/mmass/gui/panel_profound.py:25: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_profound.py:29: 'mspy' imported but unused
./usr/share/mmass/gui/panel_profound.py:30: 'doc' imported but unused
./usr/share/mmass/gui/panel_prospector.py:25: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_prospector.py:29: 'mspy' imported but unused
./usr/share/mmass/gui/panel_prospector.py:30: 'doc' imported but unused
./usr/share/mmass/gui/dlg_mascot_editor.py:23: 'config' imported but unused
./usr/share/mmass/gui/dlg_mascot_editor.py:25: 'mspy' imported but unused
./usr/share/mmass/gui/panel_mass_calculator.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_mass_calculator.py:695: local variable 'agent' is assigned to but never used
./usr/share/mmass/gui/dlg_compounds_editor.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/mspy/utilities.py:22: 'CHECK_FORCE_QUIT' imported but unused
./usr/share/mmass/mspy/utilities.py:30: 'parseFASTA' imported but unused
./usr/share/mmass/mspy/processing.py:20: 'os' imported but unused
./usr/share/mmass/mspy/processing.py:22: 'math' imported but unused
./usr/share/mmass/mspy/processing.py:828: local variable 'localMax' is assigned to but never used
./usr/share/mmass/mspy/parser_mzml.py:28: 'CHECK_FORCE_QUIT' imported but unused
./usr/share/mmass/mspy/parser_mgf.py:24: 'CHECK_FORCE_QUIT' imported but unused
./usr/share/mmass/mspy/parser_mgf.py:185: local variable 'IndexError' is assigned to but never used
./usr/share/mmass/mspy/objects.py:1738: undefined name 'peaksB'
./usr/share/mmass/mspy/objects.py:1747: undefined name 'peaksB'
./usr/share/mmass/mspy/parser_mzdata.py:27: 'CHECK_FORCE_QUIT' imported but unused
./usr/share/mmass/mspy/blocks.py:446: local variable 'mass' is assigned to but never used
./usr/share/mmass/mspy/__init__.py:19: 'from stopper import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:20: 'from blocks import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:21: 'from objects import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:24: 'from utilities import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:25: 'from processing import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:26: 'from mascot import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:29: 'parseXY' imported but unused
./usr/share/mmass/mspy/__init__.py:30: 'parseMZXML' imported but unused
./usr/share/mmass/mspy/__init__.py:31: 'parseMZDATA' imported but unused
./usr/share/mmass/mspy/__init__.py:32: 'parseMZML' imported but unused
./usr/share/mmass/mspy/__init__.py:33: 'parseMGF' imported but unused
./usr/share/mmass/mspy/__init__.py:34: 'parseFASTA' imported but unused
./usr/share/mmass/mspy/parser_mzxml.py:29: 'CHECK_FORCE_QUIT' imported but unused
./usr/share/mmass/mspy/parser_fasta.py:23: 'CHECK_FORCE_QUIT' imported but unused
./usr/share/mmass/mspy/parser_fasta.py:78: undefined name 'chain'
./usr/share/mmass/mspy/parser_fasta.py:78: undefined name 'title'
./usr/share/mmass/mspy/parser_fasta.py:78: undefined name 'accession'
./usr/share/mmass/mspy/parser_xy.py:23: 'CHECK_FORCE_QUIT' imported but unused
./usr/share/mmass/mspy/plot/viewer.py:19: 'random' imported but unused
./usr/share/mmass/mspy/plot/__init__.py:20: 'from objects import *' used; unable to detect undefined names
./usr/share/mmass/mspy/plot/__init__.py:21: 'from canvas import *' used; unable to detect undefined names
./usr/share/mmass/mspy/plot/__init__.py:22: 'viewer' imported but unused
./usr/share/mmass/mspy/plot/canvas.py:136: local variable 'dc' is assigned to but never used

---