Automated Code Analysis

pyflakes analysis of mmass_3.8.0-2_i386.deb

./usr/share/mmass/gui/panel_peaklist.py:916: invalid syntax
    
     ^
./usr/share/mmass/mmass.py:42: 'from gui.ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/doc.py:974: local variable 'modifications' is assigned to but never used
./usr/share/mmass/gui/doc.py:996: local variable 'matches' is assigned to but never used
./usr/share/mmass/gui/doc.py:1125: local variable 'modifications' is assigned to but never used
./usr/share/mmass/gui/doc.py:1223: local variable 'formula' is assigned to but never used
./usr/share/mmass/gui/images.py:22: 'ids' imported but unused
./usr/share/mmass/gui/images.py:37: redefinition of unused 'images_lib' from line 35
./usr/share/mmass/gui/images.py:39: redefinition of unused 'images_lib' from line 37
./usr/share/mmass/gui/images.py:614: 'PyEmbeddedImage' imported but unused
./usr/share/mmass/gui/panel_processing.py:25: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_info.py:22: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_info.py:26: 'mspy' imported but unused
./usr/share/mmass/gui/panel_sequence.py:21: 'numpy' imported but unused
./usr/share/mmass/gui/panel_sequence.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_sequence.py:1150: local variable 'residue' is assigned to but never used
./usr/share/mmass/gui/panel_sequence.py:1721: local variable 'position' is assigned to but never used
./usr/share/mmass/gui/panel_sequence.py:2183: local variable 'value' is assigned to but never used
./usr/share/mmass/gui/config.py:809: local variable 'value' is assigned to but never used
./usr/share/mmass/gui/dlg_select_scans.py:386: undefined name 'random'
./usr/share/mmass/gui/dlg_select_scans.py:386: undefined name 'random'
./usr/share/mmass/gui/dlg_select_scans.py:386: undefined name 'random'
./usr/share/mmass/gui/dlg_enzymes_editor.py:23: 'config' imported but unused
./usr/share/mmass/gui/dlg_enzymes_editor.py:309: local variable 'expr' is assigned to but never used
./usr/share/mmass/gui/dlg_presets_editor.py:25: 'mspy' imported but unused
./usr/share/mmass/gui/panel_documents.py:22: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_documents.py:194: local variable 'docIndex' is assigned to but never used
./usr/share/mmass/gui/panel_documents.py:195: local variable 'seqIndex' is assigned to but never used
./usr/share/mmass/gui/panel_documents.py:806: local variable 'seqItem' is assigned to but never used
./usr/share/mmass/gui/panel_documents.py:1082: local variable 'seqItem' is assigned to but never used
./usr/share/mmass/gui/dlg_references_editor.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_export.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_export.py:28: 'mspy' imported but unused
./usr/share/mmass/gui/panel_periodic_table.py:23: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_periodic_table.py:24: 'config' imported but unused
./usr/share/mmass/gui/mwx.py:20: 'copy' imported but unused
./usr/share/mmass/gui/mwx.py:26: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/mwx.py:606: local variable 'value' is assigned to but never used
./usr/share/mmass/gui/dlg_select_sequences.py:22: 'config' imported but unused
./usr/share/mmass/gui/panel_match.py:23: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/dlg_preferences.py:24: 'mspy' imported but unused
./usr/share/mmass/gui/blocks.py:20: 'config' imported but unused
./usr/share/mmass/gui/panel_mascot.py:29: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_mascot.py:33: 'mspy' imported but unused
./usr/share/mmass/gui/panel_mascot.py:34: 'doc' imported but unused
./usr/share/mmass/gui/panel_about.py:22: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_calibration.py:25: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_spectrum.py:23:./usr/share/mmass/mspy/mascot.py:357: invalid syntax
    
     ^
./usr/share/mmass/mspy/objects.py:1353: invalid syntax
        
         ^
 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_spectrum.py:563: local variable 'labelFont' is assigned to but never used
./usr/share/mmass/gui/panel_profound.py:25: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_profound.py:29: 'mspy' imported but unused
./usr/share/mmass/gui/panel_profound.py:30: 'doc' imported but unused
./usr/share/mmass/gui/panel_prospector.py:25: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_prospector.py:29: 'mspy' imported but unused
./usr/share/mmass/gui/panel_prospector.py:30: 'doc' imported but unused
./usr/share/mmass/gui/dlg_mascot_editor.py:24: 'mspy' imported but unused
./usr/share/mmass/gui/panel_compounds.py:20: 'math' imported but unused
./usr/share/mmass/gui/panel_compounds.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_compounds.py:29: 'doc' imported but unused
./usr/share/mmass/gui/dlg_compounds_editor.py:24: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_masscalc.py:23: 'from ids import *' used; unable to detect undefined names
./usr/share/mmass/gui/panel_masscalc.py:696: local variable 'agent' is assigned to but never used
./usr/share/mmass/mspy/processing.py:20: 'math' imported but unused
./usr/share/mmass/mspy/processing.py:25: 'config' imported but unused
./usr/share/mmass/mspy/proteo.py:23: 'config' imported but unused
./usr/share/mmass/mspy/parser_mzml.py:26: 'config' imported but unused
./usr/share/mmass/mspy/parser_mzdata.py:25: 'config' imported but unused
./usr/share/mmass/mspy/blocks.py:19: 'os' imported but unused
./usr/share/mmass/mspy/blocks.py:198: local variable 'mass' is assigned to but never used
./usr/share/mmass/mspy/__init__.py:19: 'config' imported but unused
./usr/share/mmass/mspy/__init__.py:22: 'from blocks import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:23: 'from objects import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:26: 'from common import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:27: 'from processing import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:28: 'from peakpicking import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:29: 'from proteo import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:30: 'from mascot import *' used; unable to detect undefined names
./usr/share/mmass/mspy/__init__.py:33: 'parseXY' imported but unused
./usr/share/mmass/mspy/__init__.py:34: 'parseMZXML' imported but unused
./usr/share/mmass/mspy/__init__.py:35: 'parseMZDATA' imported but unused
./usr/share/mmass/mspy/__init__.py:36: 'parseMZML' imported but unused
./usr/share/mmass/mspy/__init__.py:37: 'parseFASTA' imported but unused
./usr/share/mmass/mspy/parser_mzxml.py:27: 'config' imported but unused
./usr/share/mmass/mspy/peakpicking.py:19: 'numpy' imported but unused
./usr/share/mmass/mspy/peakpicking.py:23: 'config' imported but unused
./usr/share/mmass/mspy/common.py:23: 'config' imported but unused
./usr/share/mmass/mspy/parser_fasta.py:22: 'config' imported but unused
./usr/share/mmass/mspy/parser_fasta.py:71: undefined name 'chain'
./usr/share/mmass/mspy/parser_fasta.py:71: undefined name 'title'
./usr/share/mmass/mspy/parser_fasta.py:72: undefined name 'accession'
./usr/share/mmass/mspy/parser_xy.py:22: 'config' imported but unused
./usr/share/mmass/mspy/plot/__init__.py:20: 'from objects import *' used; unable to detect undefined names
./usr/share/mmass/mspy/plot/__init__.py:21: 'from canvas import *' used; unable to detect undefined names
./usr/share/mmass/mspy/plot/canvas.py:126: local variable 'dc' is assigned to but never used

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