Automated Code Analysis

pyflakes analysis of pymol_1.2r2-1.1+b1_i386.deb

./usr/share/pymol/demo/cgo03.py:1: 'from pymol.cgo import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/commanding.py:28: 'is_error' imported but unused
./usr/share/pyshared/pymol/commanding.py:49: redefinition of unused 'pymol' from line 26
./usr/share/pyshared/pymol/commanding.py:91: redefinition of unused 'pymol' from line 26
./usr/share/pyshared/pymol/commanding.py:134: redefinition of unused 'pymol' from line 26
./usr/share/pyshared/pymol/commanding.py:135: local variable 'cmd' is assigned to but never used
./usr/share/pyshared/pymol/commanding.py:164: redefinition of unused 'pymol' from line 26
./usr/share/pyshared/pymol/commanding.py:165: local variable 'cmd' is assigned to but never used
./usr/share/pyshared/pymol/commanding.py:195: local variable 'cmd' is assigned to but never used
./usr/share/pyshared/pymol/fitting.py:20: 'os' imported but unused
./usr/share/pyshared/pymol/fitting.py:24: redefinition of unused '_cmd' from line 18
./usr/share/pyshared/pymol/fitting.py:24: redefinition of unused 'lock' from line 18
./usr/share/pyshared/pymol/fitting.py:24: redefinition of unused 'unlock' from line 18
./usr/share/pyshared/pymol/fitting.py:24: 'is_ok' imported but unused
./usr/share/pyshared/pymol/fitting.py:24: 'lock' imported but unused
./usr/share/pyshared/pymol/fitting.py:24: 'Shortcut' imported but unused
./usr/share/pyshared/pymol/fitting.py:24: 'DEFAULT_SUCCESS' imported but unused
./usr/share/pyshared/pymol/fitting.py:24: '_raising' imported but unused
./usr/share/pyshared/pymol/fitting.py:24: 'is_error' imported but unused
./usr/share/pyshared/pymol/fitting.py:24: 'unlock' imported but unused
./usr/share/pyshared/pymol/monitoring.py:4: 'sys' imported but unused
./usr/share/pyshared/pymol/cgo.py:20: 'DEFAULT_SUCCESS' imported but unused
./usr/share/pyshared/pymol/cgo.py:20: '_raising' imported but unused
./usr/share/pyshared/pymol/cgo.py:158: undefined name 'last'
./usr/share/pyshared/pymol/cgo.py:165: local variable 'last' is assigned to but never used
./usr/share/pyshared/pymol/cgo.py:354: local variable 'opts1' is assigned to but never used
./usr/share/pyshared/pymol/api.py:4: 'finish_object' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'set_session' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'read_xplorstr' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'space' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load_model' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'read_sdfstr' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load_raw' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load_object' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load_cgo' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'loadable' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'read_molstr' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load_traj' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'fetch' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load_embedded' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'read_mmodstr' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load_brick' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load_map' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'load_callback' imported but unused
./usr/share/pyshared/pymol/api.py:4: 'read_pdbstr' imported but unused
./usr/share/pyshared/pymol/api.py:27: 'creating' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'isosurface' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'group' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'fragment' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'isolevel' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'extract' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'gradient' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'slice_new' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'ramp_new' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'create' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'ungroup' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'copy' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'pseudoatom' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'isodot' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'symexp' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'isomesh' imported but unused
./usr/share/pyshared/pymol/api.py:28: 'map_new' imported but unused
./usr/share/pyshared/pymol/api.py:47: 'commanding' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'cls' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'do' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'sync' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'resume' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'quit' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'log' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'splash' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'reinitialize' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'delete' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'log_close' imported but unused
./usr/share/pyshared/pymol/api.py:48: 'log_open' imported but unused
./usr/share/pyshared/pymol/api.py:62: 'controlling' imported but unused
./usr/share/pyshared/pymol/api.py:63: 'button' imported but unused
./usr/share/pyshared/pymol/api.py:63: 'unmask' imported but unused
./usr/share/pyshared/pymol/api.py:63: 'config_mouse' imported but unused
./usr/share/pyshared/pymol/api.py:63: 'edit_mode' imported but unused
./usr/share/pyshared/pymol/api.py:63: 'mouse' imported but unused
./usr/share/pyshared/pymol/api.py:63: 'set_key' imported but unused
./usr/share/pyshared/pymol/api.py:63: 'mask' imported but unused
./usr/share/pyshared/pymol/api.py:63: 'order' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_color_tuple' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'dist' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_object_list' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'identify' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_angle' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_object_matrix' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'find_pairs' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_distance' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'dihedral' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_legal_name' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'overlap' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_renderer' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'auto_measure' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_mtl_obj' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'index' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_extent' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'id_atom' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_area' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_color_indices' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'export_dots' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_povray' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'count_frames' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_names' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_drag_object_name' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_unused_name' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_version' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_modal_draw' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_type' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'phi_psi' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_atom_coords' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'count_atoms' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_phipsi' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'distance' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_chains' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_movie_locked' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_movie_length' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_object_color_index' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_raw_alignment' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_dihedral' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_vrml' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_title' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'angle' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_names_of_type' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_model' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_position' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'count_states' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_color_index' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_symmetry' imported but unused
./usr/share/pyshared/pymol/api.py:74: 'get_idtf' imported but unused
./usr/share/pyshared/pymol/api.py:126: 'pop' imported but unused
./usr/share/pyshared/pymol/api.py:126: 'select' imported but unused
./usr/share/pyshared/pymol/api.py:126: 'indicate' imported but unused
./usr/share/pyshared/pymol/api.py:126: 'deselect' imported but unused
./usr/share/pyshared/pymol/api.py:126: 'select_list' imported but unused
./usr/share/pyshared/pymol/api.py:134: 'exporting' imported but unused
./usr/share/pyshared/pymol/api.py:135: 'save' imported but unused
./usr/share/pyshared/pymol/api.py:135: 'copy_image' imported but unused
./usr/share/pyshared/pymol/api.py:135: 'multisave' imported but unused
./usr/share/pyshared/pymol/api.py:135: 'get_pdbstr' imported but unused
./usr/share/pyshared/pymol/api.py:135: 'get_fastastr' imported but unused
./usr/share/pyshared/pymol/api.py:135: 'export_coords' imported but unused
./usr/share/pyshared/pymol/api.py:135: 'cache' imported but unused
./usr/share/pyshared/pymol/api.py:135: 'get_session' imported but unused
./usr/share/pyshared/pymol/api.py:135: 'png' imported but unused
./usr/share/pyshared/pymol/api.py:147: 'editing' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'set_symmetry' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'dss' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'map_halve' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'map_double' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'unpick' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'sculpt_purge' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'alter' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'rotate' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'invert' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'matrix_reset' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'edit' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'iterate_state' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'remove' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'set_geometry' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'set_object_color' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'bond' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'reference' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'set_dihedral' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'sculpt_deactivate' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'vdw_fit' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'redo' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'set_object_ttt' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'sculpt_activate' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'fix_chemistry' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'translate_atom' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'alter_list' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'set_title' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'undo' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'transform_selection' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'protect' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'valence' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'push_undo' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'deprotect' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'replace' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'map_set' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'torsion' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'attach' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'map_trim' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'translate' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'sort' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'h_fix' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'flag' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'smooth' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'h_fill' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'rename' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'alter_state' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'unbond' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'remove_picked' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'transform_object' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'sculpt_iterate' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'update' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'cycle_valence' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'drag' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'fuse' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'iterate' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'get_editor_scheme' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'set_name' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'map_set_border' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'h_add' imported but unused
./usr/share/pyshared/pymol/api.py:148: 'split_states' imported but unused
./usr/share/pyshared/pymol/api.py:211: 'fab' imported but unused
./usr/share/pyshared/pymol/api.py:214: 'clean' imported but unused
./usr/share/pyshared/pymol/api.py:221: 'ls' imported but unused
./usr/share/pyshared/pymol/api.py:221: 'cd' imported but unused
./usr/share/pyshared/pymol/api.py:221: 'paste' imported but unused
./usr/share/pyshared/pymol/api.py:221: 'system' imported but unused
./usr/share/pyshared/pymol/api.py:221: 'pwd' imported but unused
./usr/share/pyshared/pymol/api.py:229: 'wizarding' imported but unused
./usr/share/pyshared/pymol/api.py:230: 'replace_wizard' imported but unused
./usr/share/pyshared/pymol/api.py:230: 'set_wizard_stack' imported but unused
./usr/share/pyshared/pymol/api.py:230: 'get_wizard' imported but unused
./usr/share/pyshared/pymol/api.py:230: 'get_wizard_stack' imported but unused
./usr/share/pyshared/pymol/api.py:230: 'refresh_wizard' imported but unused
./usr/share/pyshared/pymol/api.py:230: 'wizard' imported but unused
./usr/share/pyshared/pymol/api.py:230: 'set_wizard' imported but unused
./usr/share/pyshared/pymol/api.py:230: 'dirty_wizard' imported but unused
./usr/share/pyshared/pymol/api.py:241: 'fit' imported but unused
./usr/share/pyshared/pymol/api.py:241: 'intra_fit' imported but unused
./usr/share/pyshared/pymol/api.py:241: 'rms' imported but unused
./usr/share/pyshared/pymol/api.py:241: 'pair_fit' imported but unused
./usr/share/pyshared/pymol/api.py:241: 'super' imported but unused
./usr/share/pyshared/pymol/api.py:241: 'intra_rms_cur' imported but unused
./usr/share/pyshared/pymol/api.py:241: 'intra_rms' imported but unused
./usr/share/pyshared/pymol/api.py:241: 'align' imported but unused
./usr/share/pyshared/pymol/api.py:241: 'rms_cur' imported but unused
./usr/share/pyshared/pymol/api.py:254: 'pretty' imported but unused
./usr/share/pyshared/pymol/api.py:254: 'technical' imported but unused
./usr/share/pyshared/pymol/api.py:254: 'simple' imported but unused
./usr/share/pyshared/pymol/api.py:254: 'publication' imported but unused
./usr/share/pyshared/pymol/api.py:261: 'moving' imported but unused
./usr/share/pyshared/pymol/api.py:262: redefinition of unused 'mpng' from line 262
./usr/share/pyshared/pymol/api.py:262: 'mdump' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mappend' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'get_state' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mdo' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'frame' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mpng' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mclear' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mstop' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mray' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mtoggle' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mmatrix' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'get_movie_playing' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'get_frame' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mdelete' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mmove' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'forward' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'accept' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mcopy' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'madd' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mplay' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'minsert' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'set_frame' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'decline' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'middle' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mview' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'mset' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'rewind' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'backward' imported but unused
./usr/share/pyshared/pymol/api.py:262: 'ending' imported but unused
./usr/share/pyshared/pymol/api.py:295: 'viewing' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'origin' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'show' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'move' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'set_vis' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'get_colorection' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'label' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'color' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'window' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'meter_reset' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'label2' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'bg_color' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'get_vis' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'load_png' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'set_colorection' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'toggle' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'rock' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'set_color' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'del_colorection' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'draw' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'set_colorection_name' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'refresh' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'hide' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'recolour' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'stereo' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'get_scene_dict' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'bg_colour' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'capture' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'turn' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'view' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'full_screen' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'scene' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'get_view' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'disable' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'enable' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'get_scene_list' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'spectrum' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'recolor' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'set_colour' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'reset' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'scene_order' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'dirty' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'viewport' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'clip' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'ray' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'rebuild' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'set_view' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'orient' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'cartoon' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'center' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'colour' imported but unused
./usr/share/pyshared/pymol/api.py:296: 'zoom' imported but unused
./usr/share/pyshared/pymol/api.py:351: 'setting' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'get_setting_updates' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'get_setting_int' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'get_setting_tuple' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'get' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'set' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'unset_bond' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'get_setting_text' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'get_setting_legacy' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'get_setting_boolean' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'get_setting_float' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'set_bond' imported but unused
./usr/share/pyshared/pymol/api.py:352: 'unset' imported but unused
./usr/share/pyshared/pymol/api.py:367: 'helping' imported but unused
./usr/share/pyshared/pymol/api.py:368: 'help' imported but unused
./usr/share/pyshared/pymol/api.py:368: 'commands' imported but unused
./usr/share/pyshared/pymol/api.py:368: 'abort' imported but unused
./usr/share/pyshared/pymol/api.py:368: 'show_help' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'minimize' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'import_coords' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'get_bond_print' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'spheroid' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'expfit' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'fast_minimize' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'mem' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'check' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'test' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'load_coords' imported but unused
./usr/share/pyshared/pymol/api.py:375: 'dump' imported but unused
./usr/share/pyshared/pymol/api.py:395: 'util' imported but unused
./usr/share/pyshared/pymol/api.py:396: 'movie' imported but unused
./usr/share/pyshared/pymol/api.py:397: 'gui' imported but unused
./usr/share/pyshared/pymol/feedingback.py:88: undefined name 'QuietException'
./usr/share/pyshared/pymol/feedingback.py:93: undefined name 'action_amb'
./usr/share/pyshared/pymol/feedingback.py:95: undefined name 'QuietException'
./usr/share/pyshared/pymol/feedingback.py:128: undefined name 'QuietException'
./usr/share/pyshared/pymol/feedingback.py:132: undefined name 'QuietException'
./usr/share/pyshared/pymol/feedingback.py:143: undefined name 'QuietException'
./usr/share/pyshared/pymol/feedingback.py:147: undefined name 'QuietException'
./usr/share/pyshared/pymol/controlling.py:22: 'is_ok' imported but unused
./usr/share/pyshared/pymol/controlling.py:22: 'QuietException' imported but unused
./usr/share/pyshared/pymol/locking.py:8: 'fb_action' imported but unused
./usr/share/pyshared/pymol/creating.py:24: 'is_ok' imported but unused
./usr/share/pyshared/pymol/creating.py:24: 'DEFAULT_SUCCESS' imported but unused
./usr/share/pyshared/pymol/creating.py:24: 'file_ext_re' imported but unused
./usr/share/pyshared/pymol/creating.py:735: local variable 'save' is assigned to but never used
./usr/share/pyshared/pymol/computing.py:16: 'is_ok' imported but unused
./usr/share/pyshared/pymol/computing.py:16: 'lock' imported but unused
./usr/share/pyshared/pymol/computing.py:16: 'Shortcut' imported but unused
./usr/share/pyshared/pymol/computing.py:16: 'unlock' imported but unused
./usr/share/pyshared/pymol/computing.py:16: '_feedback' imported but unused
./usr/share/pyshared/pymol/computing.py:16: '_cmd' imported but unused
./usr/share/pyshared/pymol/computing.py:16: 'safe_list_eval' imported but unused
./usr/share/pyshared/pymol/computing.py:16: 'is_string' imported but unused
./usr/share/pyshared/pymol/computing.py:16: '_raising' imported but unused
./usr/share/pyshared/pymol/computing.py:16: 'DEFAULT_ERROR' imported but unused
./usr/share/pyshared/pymol/computing.py:16: 'is_error' imported but unused
./usr/share/pyshared/pymol/computing.py:16: 'fb_module' imported but unused
./usr/share/pyshared/pymol/computing.py:16: 'fb_mask' imported but unused
./usr/share/pyshared/pymol/setting.py:19: 'types' imported but unused
./usr/share/pyshared/pymol/setting.py:23: 'lock' imported but unused
./usr/share/pyshared/pymol/setting.py:23: 'unlock' imported but unused
./usr/share/pyshared/pymol/setting.py:23: 'DEFAULT_SUCCESS' imported but unused
./usr/share/pyshared/pymol/setting.py:23: '_raising' imported but unused
./usr/share/pyshared/pymol/setting.py:23: 'is_error' imported but unused
./usr/share/pyshared/pymol/constants.py:4: 'cmd' imported but unused
./usr/share/pyshared/pymol/selector.py:3: 'traceback' imported but unused
./usr/share/pyshared/pymol/moving.py:20: 'selector' imported but unused
./usr/share/pyshared/pymol/moving.py:24: 'is_ok' imported but unused
./usr/share/pyshared/pymol/moving.py:24: 'DEFAULT_SUCCESS' imported but unused
./usr/share/pyshared/pymol/moving.py:24: '_raising' imported but unused
./usr/share/pyshared/pymol/moving.py:24: 'is_error' imported but unused
./usr/share/pyshared/pymol/moving.py:24: 'toggle_sc' imported but unused
./usr/share/pyshared/pymol/moving.py:24: 'toggle_dict' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: redefinition of unused '_raising' from line 22
./usr/share/pyshared/pymol/wizarding.py:22: 'is_ok' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: 'lock' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: 'QuietException' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: 'Shortcut' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: 'unlock' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: '_feedback' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: '_raising' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: 'is_error' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: 'fb_module' imported but unused
./usr/share/pyshared/pymol/wizarding.py:22: 'fb_mask' imported but unused
./usr/share/pyshared/pymol/wizarding.py:27: 'traceback' imported but unused
./usr/share/pyshared/pymol/wizarding.py:185: '__main__' imported but unused
./usr/share/pyshared/pymol/editor.py:2: 'pymol' imported but unused
./usr/share/pyshared/pymol/editor.py:4: 'setting' imported but unused
./usr/share/pyshared/pymol/editor.py:8: 'is_list' imported but unused
./usr/share/pyshared/pymol/editor.py:8: '_raising' imported but unused
./usr/share/pyshared/pymol/editor.py:8: 'is_error' imported but unused
./usr/share/pyshared/pymol/editor.py:353: local variable 'r' is assigned to but never used
./usr/share/pyshared/pymol/gui.py:19: 'pymol' imported but unused
./usr/share/pyshared/pymol/gui.py:25: redefinition of unused 'pymol' from line 19
./usr/share/pyshared/pymol/gui.py:32: redefinition of unused 'pymol' from line 19
./usr/share/pyshared/pymol/gui.py:41: redefinition of unused 'pymol' from line 19
./usr/share/pyshared/pymol/gui.py:48: redefinition of unused 'pymol' from line 19
./usr/share/pyshared/pymol/parsing.py:70: 'copy' imported but unused
./usr/share/pyshared/pymol/parsing.py:347: local variable 'result' is assigned to but never used
./usr/share/pyshared/pymol/parsing.py:526: local variable 'w' is assigned to but never used
./usr/share/pyshared/pymol/helping.py:18: 'thread' imported but unused
./usr/share/pyshared/pymol/helping.py:21: 'is_ok' imported but unused
./usr/share/pyshared/pymol/helping.py:21: '_raising' imported but unused
./usr/share/pyshared/pymol/helping.py:21: 'DEFAULT_ERROR' imported but unused
./usr/share/pyshared/pymol/helping.py:21: 'is_error' imported but unused
./usr/share/pyshared/pymol/helping.py:132: undefined name '_self'
./usr/share/pyshared/pymol/helping.py:453: undefined name '_self'
./usr/share/pyshared/pymol/__init__.py:131: 'time' imported but unused
./usr/share/pyshared/pymol/__init__.py:133: 'math' imported but unused
./usr/share/pyshared/pymol/__init__.py:190: redefinition of unused 'pymol' from line 180
./usr/share/pyshared/pymol/__init__.py:462: local variable 'pymol_launch' is assigned to but never used
./usr/share/pyshared/pymol/__init__.py:494: redefinition of unused 'invocation' from line 36
./usr/share/pyshared/pymol/__init__.py:518: 'from xwin import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/rpc.py:15: 'sys' imported but unused
./usr/share/pyshared/pymol/rpc.py:15: 'time' imported but unused
./usr/share/pyshared/pymol/rpc.py:140: undefined name 'cgoDict'
./usr/share/pyshared/pymol/rpc.py:149: undefined name 'cgoDict'
./usr/share/pyshared/pymol/rpc.py:165: undefined name 'cgoDict'
./usr/share/pyshared/pymol/rpc.py:184: undefined name 'cgoDict'
./usr/share/pyshared/pymol/rpc.py:196: undefined name 'cgoDict'
./usr/share/pyshared/pymol/rpc.py:231: undefined name 'cgoDict'
./usr/share/pyshared/pymol/rpc.py:240: undefined name 'cgoDict'
./usr/share/pyshared/pymol/rpc.py:310: undefined name 'utils'
./usr/share/pyshared/pymol/rpc.py:311: undefined name 'utils'
./usr/share/pyshared/pymol/rpc.py:332: 'util' imported but unused
./usr/share/pyshared/pymol/rpc.py:356: 'util' imported but unused
./usr/share/pyshared/pymol/rpc.py:422: local variable 'gridName' is assigned to but never used
./usr/share/pyshared/pymol/rpc.py:476: undefined name 'objNAme'
./usr/share/pyshared/pymol/rpc.py:509: undefined name 'serv'
./usr/share/pyshared/pymol/rpc.py:511: undefined name 'serv'
./usr/share/pyshared/pymol/shortcut.py:96: local variable 'abbr_list' is assigned to but never used
./usr/share/pyshared/pymol/cmd.py:102: 're' imported but unused
./usr/share/pyshared/pymol/cmd.py:103: '_cmd' imported but unused
./usr/share/pyshared/pymol/cmd.py:105: 'thread' imported but unused
./usr/share/pyshared/pymol/cmd.py:106: 'threading' imported but unused
./usr/share/pyshared/pymol/cmd.py:109: 'parsing' imported but unused
./usr/share/pyshared/pymol/cmd.py:110: '__main__' imported but unused
./usr/share/pyshared/pymol/cmd.py:111: 'time' imported but unused
./usr/share/pyshared/pymol/cmd.py:117: 'io' imported but unused
./usr/share/pyshared/pymol/cmd.py:123: 'from constants import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/cmd.py:124: '_load2str' imported but unused
./usr/share/pyshared/pymol/cmd.py:131: 'from checking import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/cmd.py:132: '_raising' imported but unused
./usr/share/pyshared/pymol/cmd.py:164: 'from locking import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/cmd.py:169: 'from monitoring import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/cmd.py:174: 'from feedingback import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/cmd.py:175: '_feedback' imported but unused
./usr/share/pyshared/pymol/cmd.py:224: 'editor' imported but unused
./usr/share/pyshared/pymol/cmd.py:232: 'extend' imported but unused
./usr/share/pyshared/pymol/cmd.py:232: 'dummy' imported but unused
./usr/share/pyshared/pymol/cmd.py:232: 'alias' imported but unused
./usr/share/pyshared/pymol/cmd.py:236: 'python_help' imported but unused
./usr/share/pyshared/pymol/cmd.py:272: 'from api import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/cmd.py:328: 'from pymol.cmd import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/externing.py:26: 'is_ok' imported but unused
./usr/share/pyshared/pymol/externing.py:26: 'lock' imported but unused
./usr/share/pyshared/pymol/externing.py:26: 'QuietException' imported but unused
./usr/share/pyshared/pymol/externing.py:26: 'Shortcut' imported but unused
./usr/share/pyshared/pymol/externing.py:26: 'unlock' imported but unused
./usr/share/pyshared/pymol/externing.py:26: '_feedback' imported but unused
./usr/share/pyshared/pymol/externing.py:26: 'DEFAULT_ERROR' imported but unused
./usr/share/pyshared/pymol/externing.py:26: 'is_error' imported but unused
./usr/share/pyshared/pymol/externing.py:26: 'fb_module' imported but unused
./usr/share/pyshared/pymol/externing.py:26: 'fb_mask' imported but unused
./usr/share/pyshared/pymol/movie.py:20: redefinition of unused 'glob' from line 16
./usr/share/pyshared/pymol/movie.py:461: local variable 'axis' is assigned to but never used
./usr/share/pyshared/pymol/movie.py:462: local variable 'angle' is assigned to but never used
./usr/share/pyshared/pymol/movie.py:471: local variable 'direction' is assigned to but never used
./usr/share/pyshared/pymol/movie.py:548: redefinition of unused 'time' from line 22
./usr/share/pyshared/pymol/movie.py:548: redefinition of unused 'os' from line 19
./usr/share/pyshared/pymol/movie.py:576: redefinition of unused 'os' from line 19
./usr/share/pyshared/pymol/parser.py:28: 'sys' imported but unused
./usr/share/pyshared/pymol/parser.py:32: '_feedback' imported but unused
./usr/share/pyshared/pymol/parser.py:506: redefinition of unused 'sys' from line 28
./usr/share/pyshared/pymol/editing.py:21: 'is_ok' imported but unused
./usr/share/pyshared/pymol/editing.py:21: 'lock' imported but unused
./usr/share/pyshared/pymol/editing.py:2376: redefinition of unused 'pymol' from line 17
./usr/share/pyshared/pymol/experimenting.py:18: 'is_ok' imported but unused
./usr/share/pyshared/pymol/experimenting.py:18: 'lock' imported but unused
./usr/share/pyshared/pymol/experimenting.py:18: 'QuietException' imported but unused
./usr/share/pyshared/pymol/experimenting.py:18: 'Shortcut' imported but unused
./usr/share/pyshared/pymol/experimenting.py:18: 'unlock' imported but unused
./usr/share/pyshared/pymol/experimenting.py:18: 'DEFAULT_SUCCESS' imported but unused
./usr/share/pyshared/pymol/experimenting.py:18: '_raising' imported but unused
./usr/share/pyshared/pymol/experimenting.py:18: 'is_error' imported but unused
./usr/share/pyshared/pymol/experimenting.py:130: local variable 'sele' is assigned to but never used
./usr/share/pyshared/pymol/experimenting.py:227: undefined name 'loadable'
./usr/share/pyshared/pymol/exporting.py:16: 'os' imported but unused
./usr/share/pyshared/pymol/exporting.py:25: 'lock' imported but unused
./usr/share/pyshared/pymol/exporting.py:25: 'unlock' imported but unused
./usr/share/pyshared/pymol/exporting.py:28: '_feedback' imported but unused
./usr/share/pyshared/pymol/exporting.py:28: '_raising' imported but unused
./usr/share/pyshared/pymol/exporting.py:28: 'fb_module' imported but unused
./usr/share/pyshared/pymol/exporting.py:28: 'fb_mask' imported but unused
./usr/share/pyshared/pymol/util.py:16: 'math' imported but unused
./usr/share/pyshared/pymol/util.py:18: 'pymol' imported but unused
./usr/share/pyshared/pymol/util.py:19: 'os' imported but unused
./usr/share/pyshared/pymol/util.py:20: 'traceback' imported but unused
./usr/share/pyshared/pymol/util.py:75: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:75: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:92: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:102: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:112: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:112: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:163: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:163: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:206: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:206: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:212: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:212: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:223: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:223: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:230: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:230: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:237: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:237: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:244: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:244: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:251: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:251: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:258: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:258: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:265: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:265: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:272: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:272: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:279: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:279: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:286: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:286: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:293: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:293: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:299: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:299: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:307: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:307: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:360: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:385: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:411: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:411: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:424: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:424: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:459: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:459: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:473: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:473: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:487: local variable 'cmd' (defined in enclosing scope on line 15) referenced before assignment
./usr/share/pyshared/pymol/util.py:488: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:506: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:506: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:509: local variable 'reflect_scale' is assigned to but never used
./usr/share/pyshared/pymol/util.py:510: local variable 'direct_scale' is assigned to but never used
./usr/share/pyshared/pymol/util.py:511: local variable 'gamma_scale' is assigned to but never used
./usr/share/pyshared/pymol/util.py:512: local variable 'ambient_scale' is assigned to but never used
./usr/share/pyshared/pymol/util.py:623: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:635: local variable 'cmd' (defined in enclosing scope on line 15) referenced before assignment
./usr/share/pyshared/pymol/util.py:636: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:636: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:647: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:647: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:678: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:678: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/util.py:730: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:1210: redefinition of unused 'pymol' from line 18
./usr/share/pyshared/pymol/util.py:1210: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/selecting.py:21: 'is_tuple' imported but unused
./usr/share/pyshared/pymol/selecting.py:21: 'lock' imported but unused
./usr/share/pyshared/pymol/selecting.py:21: 'unlock' imported but unused
./usr/share/pyshared/pymol/selecting.py:21: '_feedback' imported but unused
./usr/share/pyshared/pymol/selecting.py:21: '_raising' imported but unused
./usr/share/pyshared/pymol/selecting.py:21: 'fb_module' imported but unused
./usr/share/pyshared/pymol/selecting.py:21: 'fb_mask' imported but unused
./usr/share/pyshared/pymol/xray.py:19: 'QuietException' imported but unused
./usr/share/pyshared/pymol/xray.py:75: redefinition of function 'sg_sym_to_mat_list' from line 55
./usr/share/pyshared/pymol/menu.py:33: local variable 'list' is assigned to but never used
./usr/share/pyshared/pymol/menu.py:1331: local variable 'result2' is assigned to but never used
./usr/share/pyshared/pymol/menu.py:1526: undefined name 'self_cmd'
./usr/share/pyshared/pymol/menu.py:1528: undefined name 'self_cmd'
./usr/share/pyshared/pymol/menu.py:1529: undefined name 'self_cmd'
./usr/share/pyshared/pymol/menu.py:1530: undefined name 'self_cmd'
./usr/share/pyshared/pymol/menu.py:1531: undefined name 'self_cmd'
./usr/share/pyshared/pymol/menu.py:1533: undefined name 'self_cmd'
./usr/share/pyshared/pymol/menu.py:1535: undefined name 'self_cmd'
./usr/share/pyshared/pymol/m4x.py:26: 'Storage' imported but unused
./usr/share/pyshared/pymol/m4x.py:141: undefined name '_self'
./usr/share/pyshared/pymol/m4x.py:183: undefined name 'labels'
./usr/share/pyshared/pymol/m4x.py:194: undefined name 'cgos'
./usr/share/pyshared/pymol/m4x.py:205: undefined name 'ligands'
./usr/share/pyshared/pymol/m4x.py:209: undefined name 'm4x_ligands'
./usr/share/pyshared/pymol/m4x.py:211: undefined name 'm4x_ligands'
./usr/share/pyshared/pymol/m4x.py:216: undefined name 'sites'
./usr/share/pyshared/pymol/m4x.py:220: undefined name 'm4x_sites'
./usr/share/pyshared/pymol/m4x.py:222: undefined name 'm4x_sites'
./usr/share/pyshared/pymol/m4x.py:227: undefined name 'waters'
./usr/share/pyshared/pymol/m4x.py:231: undefined name 'm4x_waters'
./usr/share/pyshared/pymol/m4x.py:233: undefined name 'm4x_waters'
./usr/share/pyshared/pymol/m4x.py:238: undefined name 'dashes'
./usr/share/pyshared/pymol/m4x.py:249: undefined name 'zooms'
./usr/share/pyshared/pymol/m4x.py:253: undefined name 'm4x_ligands'
./usr/share/pyshared/pymol/m4x.py:357: local variable 'zoom_context' is assigned to but never used
./usr/share/pyshared/pymol/m4x.py:409: local variable 'hbond' is assigned to but never used
./usr/share/pyshared/pymol/querying.py:20: 'lock' imported but unused
./usr/share/pyshared/pymol/querying.py:20: 'unlock' imported but unused
./usr/share/pyshared/pymol/querying.py:20: 'Shortcut' imported but unused
./usr/share/pyshared/pymol/internal.py:10: 'viewing' imported but unused
./usr/share/pyshared/pymol/internal.py:23: local variable 'r' is assigned to but never used
./usr/share/pyshared/pymol/internal.py:49: local variable '_pymol' is assigned to but never used
./usr/share/pyshared/pymol/internal.py:58: local variable 'r' is assigned to but never used
./usr/share/pyshared/pymol/internal.py:263: 'sys' imported but unused
./usr/share/pyshared/pymol/internal.py:307: local variable 'size' is assigned to but never used
./usr/share/pyshared/pymol/internal.py:540: undefined name 'os'
./usr/share/pyshared/pymol/internal.py:542: undefined name 'os'
./usr/share/pyshared/pymol/internal.py:543: undefined name 'os'
./usr/share/pyshared/pymol/internal.py:545: undefined name 'os'
./usr/share/pyshared/pymol/internal.py:546: undefined name 'os'
./usr/share/pyshared/pymol/viewing.py:29: '_raising' imported but unused
./usr/share/pyshared/pymol/viewing.py:29: 'unlock' imported but unused
./usr/share/pyshared/pymol/viewing.py:29: 'safe_alpha_list_eval' imported but unused
./usr/share/pyshared/pymol/viewing.py:29: 'lock' imported but unused
./usr/share/pyshared/pymol/viewing.py:38: redefinition of unused 'thread' from line 17
./usr/share/pyshared/pymol/viewing.py:660: undefined name 'if_ok'
./usr/share/pyshared/pymol/viewing.py:937: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/viewing.py:1032: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/viewing.py:1066: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/viewing.py:1067: local variable 'keys' is assigned to but never used
./usr/share/pyshared/pymol/viewing.py:1077: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/viewing.py:1107: local variable 'r' is assigned to but never used
./usr/share/pyshared/pymol/viewing.py:1162: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/viewing.py:1280: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/viewing.py:1616: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/viewing.py:1621: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/viewing.py:1629: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/viewing.py:1635: redefinition of unused 'pymol' from line 22
./usr/share/pyshared/pymol/importing.py:21: 'is_ok' imported but unused
./usr/share/pyshared/pymol/importing.py:21: 'lock' imported but unused
./usr/share/pyshared/pymol/importing.py:21: 'unlock' imported but unused
./usr/share/pyshared/pymol/importing.py:21: '_feedback' imported but unused
./usr/share/pyshared/pymol/importing.py:21: 'fb_module' imported but unused
./usr/share/pyshared/pymol/importing.py:21: '_raising' imported but unused
./usr/share/pyshared/pymol/importing.py:21: 'fb_mask' imported but unused
./usr/share/pyshared/pymol/importing.py:32: redefinition of unused 'm4x' from line 30
./usr/share/pyshared/pymol/importing.py:34: 'parser' imported but unused
./usr/share/pyshared/pymol/importing.py:35: 'SDFRec' imported but unused
./usr/share/pyshared/pymol/importing.py:36: 'CIFRec' imported but unused
./usr/share/pyshared/pymol/importing.py:408: local variable 'r' is assigned to but never used
./usr/share/pyshared/pymol/importing.py:421: local variable 'r' is assigned to but never used
./usr/share/pyshared/pymol/importing.py:518: undefined name '__builtin__'
./usr/share/pyshared/pymol/importing.py:519: undefined name 'sys'
./usr/share/pyshared/pymol/importing.py:525: undefined name 'mode_name'
./usr/share/pyshared/pymol/importing.py:945: undefined name 'discrete_default'
./usr/share/pyshared/pymol/importing.py:949: undefined name 'mimic'
./usr/share/pyshared/pymol/importing.py:953: undefined name 'raising'
./usr/share/pyshared/pymol/importing.py:1079: undefined name '_self'
./usr/share/pyshared/pymol/importing.py:1079: undefined name '_self'
./usr/share/pyshared/pymol/importing.py:1091: undefined name '_self'
./usr/share/pyshared/pymol/importing.py:1094: undefined name '_self'
./usr/share/pyshared/pymol/importing.py:1099: undefined name '_self'
./usr/share/pyshared/pymol/importing.py:1099: undefined name '_self'
./usr/share/pyshared/pymol/importing.py:1100: undefined name '_self'
./usr/share/pyshared/pymol/importing.py:1100: undefined name '_self'
./usr/share/pyshared/pymol/importing.py:1294: local variable 'abort' is assigned to but never used
./usr/share/pyshared/pymol/opengl/__init__.py:4: 'multiarray' imported but unused
./usr/share/pyshared/pymol/opengl/gl/__init__.py:23: redefinition of unused '_opengl' from line 21
./usr/share/pyshared/pymol/opengl/gl/__init__.py:30: redefinition of unused 'openglutil' from line 28
./usr/share/pyshared/pymol/opengl/gl/__init__.py:32: redefinition of unused '_opengl' from line 23
./usr/share/pyshared/pymol/opengl/gl/__init__.py:33: redefinition of unused 'openglutil' from line 30
./usr/share/pyshared/pymol/opengl/gl/__init__.py:38: 'from glconst import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/opengl/gl/__init__.py:88: 'string' imported but unused
./usr/share/pyshared/pymol/opengl/glu/gluconst.py:2: 'from pymol.opengl.gl.glconst import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/opengl/glu/__init__.py:6: 'ArrayType' imported but unused
./usr/share/pyshared/pymol/opengl/glu/__init__.py:13: redefinition of unused '_glu' from line 11
./usr/share/pyshared/pymol/opengl/glu/__init__.py:15: redefinition of unused '_glu' from line 13
./usr/share/pyshared/pymol/opengl/glu/__init__.py:17: 'from gluconst import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/opengl/glu/__init__.py:18: 'Error' imported but unused
./usr/share/pyshared/pymol/opengl/glu/__init__.py:34: 'string' imported but unused
./usr/share/pyshared/pymol/opengl/glut/__init__.py:1: 'opengl' imported but unused
./usr/share/pyshared/pymol/opengl/glut/__init__.py:3: 'from _glut import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/opengl/glut/__init__.py:5: 'from _glut import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/opengl/glut/__init__.py:15: 'from glutconst import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/contrib/__init__.py:15: undefined name 'cmd'
./usr/share/pyshared/pymol/contrib/__init__.py:16: undefined name 'cmd'
./usr/share/pyshared/pymol/contrib/__init__.py:17: undefined name 'cmd'
./usr/share/pyshared/pymol/contrib/__init__.py:20: undefined name 'cmd'
./usr/share/pyshared/pymol/contrib/__init__.py:21: undefined name 'cmd'
./usr/share/pyshared/pymol/contrib/__init__.py:22: undefined name 'cmd'
./usr/share/pyshared/pymol/contrib/__init__.py:24: undefined name 'cmd'
./usr/share/pyshared/pymol/contrib/__init__.py:59: undefined name 'os'
./usr/share/pyshared/pymol/contrib/__init__.py:60: undefined name 'os'
./usr/share/pyshared/pymol/wizard/dragging.py:3: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/dragging.py:4: 'types' imported but unused
./usr/share/pyshared/pymol/wizard/dragging.py:5: 'threading' imported but unused
./usr/share/pyshared/pymol/wizard/stereodemo.py:4: 'types' imported but unused
./usr/share/pyshared/pymol/wizard/stereodemo.py:81: 'from pymol.cgo import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/wizard/cleanup.py:1: 'sys' imported but unused
./usr/share/pyshared/pymol/wizard/cleanup.py:6: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/appearance.py:5: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/pseudoatom.py:4: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/pseudoatom.py:5: 'types' imported but unused
./usr/share/pyshared/pymol/wizard/fedora.py:3: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/message.py:3: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/density.py:4: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/density.py:83: local variable 'level_kee' is assigned to but never used
./usr/share/pyshared/pymol/wizard/density.py:184: local variable 'default_track' is assigned to but never used
./usr/share/pyshared/pymol/wizard/distance.py:4: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/distance.py:6: 'traceback' imported but unused
./usr/share/pyshared/pymol/wizard/renaming.py:4: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/renaming.py:5: 'types' imported but unused
./usr/share/pyshared/pymol/wizard/box.py:6: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/box.py:8: 'Bond' imported but unused
./usr/share/pyshared/pymol/wizard/box.py:11: 'from pymol.cgo import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/wizard/box.py:118: local variable 'obj' is assigned to but never used
./usr/share/pyshared/pymol/wizard/box.py:440: redefinition of function 'get_prompt' from line 71
./usr/share/pyshared/pymol/wizard/annotation.py:3: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/annotation.py:21: redefinition of unused 'pymol' from line 3
./usr/share/pyshared/pymol/wizard/annotation.py:37: 'copy' imported but unused
./usr/share/pyshared/pymol/wizard/annotation.py:44: redefinition of unused 'pymol' from line 3
./usr/share/pyshared/pymol/wizard/benchmark.py:4: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/benchmark.py:5: 'types' imported but unused
./usr/share/pyshared/pymol/wizard/sculpting.py:6: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/mutagenesis.py:7: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/mutagenesis.py:8: 'os' imported but unused
./usr/share/pyshared/pymol/wizard/mutagenesis.py:10: 'traceback' imported but unused
./usr/share/pyshared/pymol/wizard/mutagenesis.py:49: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:49: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:224: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:224: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:233: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:233: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:243: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:243: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:252: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:252: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:261: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:261: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:270: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:270: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:280: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:280: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:305: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:305: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:319: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:319: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:333: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:333: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:448: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:718: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:718: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/mutagenesis.py:738: redefinition of unused 'pymol' from line 7
./usr/share/pyshared/pymol/wizard/mutagenesis.py:738: local variable 'pymol' is assigned to but never used
./usr/share/pyshared/pymol/wizard/label.py:6: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/toggle.py:3: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/toggle.py:9: local variable '_self' is assigned to but never used
./usr/share/pyshared/pymol/wizard/demo.py:3: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/demo.py:4: 'types' imported but unused
./usr/share/pyshared/pymol/wizard/demo.py:59: 'from pymol.cgo import *' used; unable to detect undefined names
./usr/share/pyshared/pymol/wizard/pair_fit.py:47: local variable 'lst' is assigned to but never used
./usr/share/pyshared/pymol/wizard/pair_fit.py:82: local variable 'c' is assigned to but never used
./usr/share/pyshared/pymol/wizard/filter.py:8: 'pymol' imported but unused
./usr/share/pyshared/pymol/wizard/filter.py:212: local variable 'cnt' is assigned to but never used
./usr/share/pyshared/pymol/wizard/measurement.py:6: 'traceback' imported but unused
./usr/share/pyshared/pymol/wizard/security.py:6: 'pymol' imported but unused
./usr/share/pyshared/pmg_wx/__init__.py:23: 'sys' imported but unused
./usr/share/pyshared/pmg_wx/__init__.py:24: 'from wxPython.wx import *' used; unable to detect undefined names
./usr/share/pyshared/chempy/gamess1.py:21: 'shutil' imported but unused
./usr/share/pyshared/chempy/gamess1.py:23: 're' imported but unused
./usr/share/pyshared/chempy/gamess1.py:25: 'sys' imported but unused
./usr/share/pyshared/chempy/gamess1.py:26: 'time' imported but unused
./usr/share/pyshared/chempy/gamess1.py:29: 'Brick' imported but unused
./usr/share/pyshared/chempy/gamess1.py:296: local variable 'll' is assigned to but never used
./usr/share/pyshared/chempy/gamess1.py:304: local variable 'lst' is assigned to but never used
./usr/share/pyshared/chempy/gamess1.py:315: local variable 'll' is assigned to but never used
./usr/share/pyshared/chempy/gamess1.py:323: local variable 'lst' is assigned to but never used
./usr/share/pyshared/chempy/models.py:17: 'from cpv import *' used; unable to detect undefined names
./usr/share/pyshared/chempy/models.py:191: local variable 'nAtom' is assigned to but never used
./usr/share/pyshared/chempy/models.py:291: local variable 'nAtom' is assigned to but never used
./usr/share/pyshared/chempy/models.py:340: local variable 'nBond' is assigned to but never used
./usr/share/pyshared/chempy/models.py:502: local variable 'result' is assigned to but never used
./usr/share/pyshared/chempy/models.py:625: local variable 'nAtom' is assigned to but never used
./usr/share/pyshared/chempy/models.py:649: local variable 'nAtom' is assigned to but never used
./usr/share/pyshared/chempy/models.py:664: local variable 'nBond' is assigned to but never used
./usr/share/pyshared/chempy/mae.py:15: 'Connected' imported but unused
./usr/share/pyshared/chempy/cex.py:211: undefined name 'atom'
./usr/share/pyshared/chempy/brick.py:17: 'from numpy import *' used; unable to detect undefined names
./usr/share/pyshared/chempy/mol.py:38: local variable 'nameDict' is assigned to but never used
./usr/share/pyshared/chempy/mol.py:111: local variable 'charge_values' is assigned to but never used
./usr/share/pyshared/chempy/pkl.py:17: 'pickle' imported but unused
./usr/share/pyshared/chempy/pkl.py:34: local variable 'result' is assigned to but never used
./usr/share/pyshared/chempy/pkl.py:49: local variable 'result' is assigned to but never used
./usr/share/pyshared/chempy/xyz.py:15: 'Atom' imported but unused
./usr/share/pyshared/chempy/xyz.py:16: 'Connected' imported but unused
./usr/share/pyshared/chempy/xyz.py:16: 'Indexed' imported but unused
./usr/share/pyshared/chempy/xyz.py:17: 'string' imported but unused
./usr/share/pyshared/chempy/place.py:20: 'from chempy.cpv import *' used; unable to detect undefined names
./usr/share/pyshared/chempy/place.py:28: local variable 'at' is assigned to but never used
./usr/share/pyshared/chempy/__init__.py:173: undefined name 'chempy'
./usr/share/pyshared/chempy/__init__.py:180: local variable 'result' is assigned to but never used
./usr/share/pyshared/chempy/__init__.py:195: local variable 'result' is assigned to but never used
./usr/share/pyshared/chempy/mass.py:41: undefined name 'model'
./usr/share/pyshared/chempy/protein.py:24: 'Connected' imported but unused
./usr/share/pyshared/chempy/protein.py:26: 'from chempy.cpv import *' used; unable to detect undefined names
./usr/share/pyshared/chempy/dictdb.py:18: redefinition of unused 'socket' from line 16
./usr/share/pyshared/chempy/dictdb.py:389: local variable 'data' is assigned to but never used
./usr/share/pyshared/chempy/dictdb.py:620: local variable 'fp' is assigned to but never used
./usr/share/pyshared/chempy/dictdb.py:642: redefinition of unused 'os' from line 23
./usr/share/pyshared/chempy/cpv.py:26: 'copy' imported but unused
./usr/share/pyshared/chempy/cpv.py:46: redefinition of function 'distance_sq' from line 39
./usr/share/pyshared/chempy/cpv.py:179: redefinition of function 'transpose' from line 151
./usr/share/pyshared/chempy/cpv.py:380: local variable 'ix' is assigned to but never used
./usr/share/pyshared/chempy/gms.py:15: 'Indexed' imported but unused
./usr/share/pyshared/chempy/gms.py:16: 'Atom' imported but unused
./usr/share/pyshared/chempy/gms.py:16: 'Bond' imported but unused
./usr/share/pyshared/chempy/gms.py:22: 'string' imported but unused
./usr/share/pyshared/chempy/hetatm.py:19: 'Neighbor' imported but unused
./usr/share/pyshared/chempy/hetatm.py:20: 'Connected' imported but unused
./usr/share/pyshared/chempy/arc.py:15: 'Atom' imported but unused
./usr/share/pyshared/chempy/arc.py:16: 'Connected' imported but unused
./usr/share/pyshared/chempy/arc.py:16: 'Indexed' imported but unused
./usr/share/pyshared/chempy/arc.py:17: 'string' imported but unused
./usr/share/pyshared/chempy/arc.py:18: 'copy' imported but unused
./usr/share/pyshared/chempy/solvate.py:30: undefined name 'RunError'
./usr/share/pyshared/chempy/cif.py:17: 'copy' imported but unused
./usr/share/pyshared/chempy/cif.py:19: 'io' imported but unused
./usr/share/pyshared/chempy/cif.py:523: undefined name 'r'
./usr/share/pyshared/chempy/mmd.py:15: 'Indexed' imported but unused
./usr/share/pyshared/chempy/neighbor.py:15: 'copy' imported but unused
./usr/share/pyshared/chempy/tinker/amber.py:850: local variable 'label' is assigned to but never used
./usr/share/pyshared/chempy/tinker/amber.py:855: local variable 'st' is assigned to but never used
./usr/share/pyshared/chempy/tinker/__init__.py:18: 're' imported but unused
./usr/share/pyshared/chempy/tinker/__init__.py:21: 'time' imported but unused
./usr/share/pyshared/chempy/tinker/__init__.py:53: undefined name 'RunError'
./usr/share/pyshared/chempy/tinker/__init__.py:113: undefined name 'RunError'
./usr/share/pyshared/chempy/tinker/realtime.py:21: 'hetatm' imported but unused
./usr/share/pyshared/chempy/tinker/realtime.py:21: 'protein' imported but unused
./usr/share/pyshared/chempy/tinker/realtime.py:23: 'protein_amber99' imported but unused
./usr/share/pyshared/chempy/tinker/realtime.py:29: 'os' imported but unused
./usr/share/pyshared/chempy/bmin/__init__.py:3: 'shutil' imported but unused
./usr/share/pyshared/chempy/bmin/__init__.py:4: 'glob' imported but unused
./usr/share/pyshared/chempy/bmin/__init__.py:6: 'string' imported but unused
./usr/share/pyshared/chempy/bmin/__init__.py:9: 'socket' imported but unused
./usr/share/pyshared/chempy/bmin/__init__.py:10: 'getpass' imported but unused
./usr/share/pyshared/chempy/bmin/__init__.py:11: redefinition of unused 're' from line 5
./usr/share/pyshared/chempy/bmin/__init__.py:11: 're' imported but unused
./usr/share/pyshared/chempy/bmin/state.py:5: 'os' imported but unused
./usr/share/pyshared/chempy/bmin/state.py:6: 're' imported but unused
./usr/share/pyshared/chempy/bmin/state.py:7: 'getpass' imported but unused
./usr/share/pyshared/chempy/bmin/realtime.py:4: 'io' imported but unused
./usr/share/pyshared/chempy/bmin/realtime.py:10: 'os' imported but unused
./usr/share/pyshared/chempy/bmin/realtime.py:23: local variable 'state' is assigned to but never used
./usr/share/pyshared/chempy/fast/__init__.py:6: 'from Numeric import *' used; unable to detect undefined names
./usr/share/pyshared/chempy/fast/__init__.py:7: 'from Precision import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/PMGApp.py:20: 'threading' imported but unused
./usr/share/pyshared/pmg_tk/PMGApp.py:28: 'from Tkinter import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/PMGApp.py:29: 'from tkFileDialog import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/ColorEditor.py:19: 'from Tkinter import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/ColorEditor.py:24: 'copy' imported but unused
./usr/share/pyshared/pmg_tk/ColorEditor.py:31: local variable 'items' is assigned to but never used
./usr/share/pyshared/pmg_tk/SetEditor.py:17: 'from Tkinter import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/__init__.py:22: 'from PMGApp import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/Setting.py:20: 'from Tkinter import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/Setting.py:21: 'Pmw' imported but unused
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:8: 'from Tkinter import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:9: 'from tkFileDialog import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:181: local variable 'btn_orient' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:183: local variable 'btn_rtrace' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:188: local variable 'btn_unpick' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:189: local variable 'btn_hidesele' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:190: local variable 'btn_reset' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:191: local variable 'btn_getview' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:197: local variable 'btn_rewind' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:198: local variable 'btn_back' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:199: local variable 'btn_stop' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:200: local variable 'btn_play' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:201: local variable 'btn_forward' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:202: local variable 'btn_last' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:203: local variable 'btn_ccache' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:258: local variable 'th' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/__init__.py:697: local variable 'dir' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/builder.py:2: 'sys' imported but unused
./usr/share/pyshared/pmg_tk/skins/normal/builder.py:9: 'from Tkinter import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/skins/normal/builder.py:14: 'computing' imported but unused
./usr/share/pyshared/pmg_tk/skins/normal/builder.py:859: local variable 'verb' is assigned to but never used
./usr/share/pyshared/pmg_tk/skins/normal/builder.py:1510: local variable 'check' is assigned to but never used
./usr/share/pyshared/pmg_tk/startup/apbs_tools.py:47: 'from Tkinter import *' used; unable to detect undefined names
./usr/share/pyshared/pmg_tk/startup/apbs_tools.py:75: redefinition of unused 'pymol' from line 71
./usr/share/pyshared/pmg_tk/startup/apbs_tools.py:1289: local variable 'junk' is assigned to but never used
./usr/share/pyshared/pmg_tk/startup/apbs_tools.py:1430: local variable 'junk' is assigned to but never used
./usr/share/pyshared/pmg_tk/startup/apbs_tools.py:1432: redefinition of function 'show_error' from line 1425
./usr/share/pyshared/pmg_tk/startup/apbs_tools.py:1563: local variable 'junk' is assigned to but never used
./usr/share/pyshared/pmg_tk/startup/apbs_tools.py:1588: redefinition of unused 'os' from line 45
./usr/share/pyshared/pmg_tk/startup/apbs_tools.py:1589: redefinition of unused 'Tkinter' from line 46
./usr/share/pyshared/pmg_tk/startup/apbs_tools.py:1620: local variable 'interior' is assigned to but never used
./usr/share/pyshared/pmg_tk/startup/remote_pdb_load.py:31: 'from Tkinter import *' used; unable to detect undefined names
./usr/share/doc/pymol/examples/generate_amber.py:6: 'os' imported but unused
./usr/share/doc/pymol/examples/povray01.py:6: undefined name 'util'
./usr/share/doc/pymol/examples/generate_mmff.py:7: 'os' imported but unused
./usr/share/chempy/sidechains/generate2.py:6: 'glob' imported but unused
./usr/share/chempy/sidechains/generate2.py:9: undefined name 'sys'
./usr/share/chempy/sidechains/generate1.py:8: undefined name 'sys'
./usr/share/chempy/sidechains/generate1.py:13: redefinition of unused 'cmd' from line 10
./usr/share/chempy/sidechains/generate1.py:22: local variable 'done' is assigned to but never used
./usr/share/chempy/sidechains/sc_bb_ind.py:4: 'glob' imported but unused
./usr/share/chempy/sidechains/sc_bb_ind.py:5: 'deepcopy' imported but unused
./usr/share/chempy/sidechains/sc_bb_dep.py:4: 'glob' imported but unused
./usr/share/chempy/sidechains/sc_bb_dep.py:5: 'deepcopy' imported but unused

---