Automated Code Analysis

pyflakes analysis of python-biopython-doc_1.57-1_all.deb

./usr/share/doc/python-biopython-doc/Doc/examples/fasta_dictionary.py:34: redefinition of function 'get_accession_num' from line 10
./usr/share/doc/python-biopython-doc/Doc/examples/local_blast.py:9: 'sys' imported but unused
./usr/share/doc/python-biopython-doc/Doc/examples/clustal_run.py:7: 'os' imported but unused
./usr/share/doc/python-biopython-doc/Doc/examples/fasta_iterator.py:32: redefinition of function 'extract_organisms' from line 7
./usr/share/doc/python-biopython-doc/Doc/examples/make_subsmat.py:5: 'sys' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_Restriction.py:6: 'from Bio.Restriction import *' used; unable to detect undefined names
./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_online.py:35: 'StringIO' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_PopGen_SimCoal.py:8: 'SimCoal' imported but unused
./usr/share/doc/python-biopython-doc/Tests/setup_BioSQL.py:10: 'BioSeqDatabase' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_GraphicsBitmaps.py:25: redefinition of unused 'r' from line 24
./usr/share/doc/python-biopython-doc/Tests/test_GraphicsBitmaps.py:31: 'renderPM' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_GraphicsBitmaps.py:39: redefinition of unused 'i' from line 38
./usr/share/doc/python-biopython-doc/Tests/test_NCBIStandalone.py:19: local variable 'handle' is assigned to but never used
./usr/share/doc/python-biopython-doc/Tests/test_NCBIStandalone.py:35: local variable 'handle' is assigned to but never used
./usr/share/doc/python-biopython-doc/Tests/test_SubsMat.py:69: 'numpy' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Astral.py:9: 'from Bio.SCOP import *' used; unable to detect undefined names
./usr/share/doc/python-biopython-doc/Tests/test_FSSP.py:1: 'Align' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_FSSP.py:5: 'cPickle' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_FSSP.py:6: 'time' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_HotRand.py:5: 'sys' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Residues.py:9: 'from Bio.SCOP.Residues import *' used; unable to detect undefined names
./usr/share/doc/python-biopython-doc/Tests/test_Probcons_tool.py:10: 'subprocess' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_File.py:6: 'os' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_File.py:7: 'string' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_DocSQL.py:5: 'Bio' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_Phylo_depend.py:12: 'networkx' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_Phylo_depend.py:18: 'pygraphviz' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_Phylo_depend.py:21: 'pydot' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_SVDSuperimposer.py:7: 'from numpy import *' used; unable to detect undefined names
./usr/share/doc/python-biopython-doc/Tests/test_SVDSuperimposer.py:13: 'from Bio.SVDSuperimposer import *' used; unable to detect undefined names
./usr/share/doc/python-biopython-doc/Tests/test_Wise.py:14: 'requires_wise' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_PopGen_SimCoal_nodepend.py:8: 'SimCoal' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_GraphicsGeneral.py:29: redefinition of unused 'r' from line 28
./usr/share/doc/python-biopython-doc/Tests/requires_internet.py:26: local variable 'x' is assigned to but never used
./usr/share/doc/python-biopython-doc/Tests/test_GraphicsDistribution.py:20: redefinition of unused 'r' from line 19
./usr/share/doc/python-biopython-doc/Tests/test_GraphicsDistribution.py:27: 'LineDistribution' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_KDTree.py:6: 'numpy' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_KDTree.py:13: '_CKDTree' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py:10: 'numpy' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py:17: 'sys' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_PopGen_FDist.py:6: 'commands' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_PopGen_FDist.py:11: 'FDist' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py:22: '_CKDTree' imported but unused
./usr/share/doc/python-biopython-doc/Tests/test_kNN.py:12: 'numpy' imported but unused

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