Automated Code Analysis

pyflakes analysis of python-biopython_1.57-1+b1_i386.deb

./usr/share/pyshared/Bio/DocSQL.py:144: local variable 'message' is assigned to but never used
./usr/share/pyshared/Bio/pairwise2.py:157: local variable 'x' is assigned to but never used
./usr/share/pyshared/Bio/ParserSupport.py:30: 'traceback' imported but unused
./usr/share/pyshared/Bio/ParserSupport.py:31: 'from types import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/HotRand.py:69: undefined name 'hex_convert'
./usr/share/pyshared/Bio/_py3k.py:48: redefinition of function '_as_unicode' from line 15
./usr/share/pyshared/Bio/_py3k.py:55: redefinition of function '_as_bytes' from line 23
./usr/share/pyshared/Bio/_py3k.py:61: redefinition of function '_is_int_or_long' from line 35
./usr/share/pyshared/Bio/Compass/__init__.py:224: 'from Bio.ParserSupport import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Wise/dnal.py:18: 'os' imported but unused
./usr/share/pyshared/Bio/Motif/_Motif.py:10: 'random' imported but unused
./usr/share/pyshared/Bio/Motif/_Motif.py:477: local variable 's' is assigned to but never used
./usr/share/pyshared/Bio/Motif/_Motif.py:526: local variable 's' is assigned to but never used
./usr/share/pyshared/Bio/Motif/__init__.py:15: 'ScoreDistribution' imported but unused
./usr/share/pyshared/Bio/Motif/Thresholds.py:8: 'random' imported but unused
./usr/share/pyshared/Bio/Motif/Thresholds.py:8: 'math' imported but unused
./usr/share/pyshared/Bio/Motif/Parsers/MAST.py:128: undefined name 'sequence'
./usr/share/pyshared/Bio/Motif/Parsers/MEME.py:10: 'sqrt' imported but unused
./usr/share/pyshared/Bio/Motif/Parsers/MEME.py:365: 'from Bio.ParserSupport import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Motif/Parsers/AlignAce.py:58: 'from Bio.ParserSupport import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Motif/Applications/__init__.py:7: 'AlignAceCommandline' imported but unused
./usr/share/pyshared/Bio/Motif/Applications/__init__.py:8: 'CompareAceCommandline' imported but unused
./usr/share/pyshared/Bio/Nexus/Nexus.py:19: 'NodeData' imported but unused
./usr/share/pyshared/Bio/Nexus/Nexus.py:115: local variable 'skip' is assigned to but never used
./usr/share/pyshared/Bio/Nexus/Nexus.py:920: local variable 'dummy' is assigned to but never used
./usr/share/pyshared/Bio/Nexus/Nexus.py:928: local variable 'open' is assigned to but never used
./usr/share/pyshared/Bio/Nexus/Nexus.py:935: local variable 'closing' is assigned to but never used
./usr/share/pyshared/Bio/Nexus/Nexus.py:1062: local variable 'close' is assigned to but never used
./usr/share/pyshared/Bio/Nexus/Nexus.py:1091: local variable 'hyphen' is assigned to but never used
./usr/share/pyshared/Bio/Nexus/Nexus.py:1095: local variable 'backslash' is assigned to but never used
./usr/share/pyshared/Bio/Nexus/Nexus.py:1734: redefinition of function '_get_command_lines' from line 1729
./usr/share/pyshared/Bio/Nexus/Trees.py:15: 'copy' imported but unused
./usr/share/pyshared/Bio/Nexus/Trees.py:791: local variable 'max_support' is assigned to but never used
./usr/share/pyshared/Bio/Affy/CelFile.py:77: 'from numpy import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Graphics/BasicChromosome.py:29: 'os' imported but unused
./usr/share/pyshared/Bio/Graphics/BasicChromosome.py:32: 'canvas' imported but unused
./usr/share/pyshared/Bio/Graphics/BasicChromosome.py:38: 'renderPS' imported but unused
./usr/share/pyshared/Bio/Graphics/BasicChromosome.py:38: 'renderPDF' imported but unused
./usr/share/pyshared/Bio/Graphics/__init__.py:12: redefinition of unused 'r' from line 11
./usr/share/pyshared/Bio/Graphics/__init__.py:45: redefinition of unused 'renderPM' from line 40
./usr/share/pyshared/Bio/Graphics/Comparative.py:8: 'canvas' imported but unused
./usr/share/pyshared/Bio/Graphics/Comparative.py:14: 'Group' imported but unused
./usr/share/pyshared/Bio/Graphics/Comparative.py:15: 'renderPS' imported but unused
./usr/share/pyshared/Bio/Graphics/Comparative.py:15: 'renderPDF' imported but unused
./usr/share/pyshared/Bio/Graphics/Comparative.py:16: 'from reportlab.graphics.charts.markers import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Graphics/Distribution.py:14: 'canvas' imported but unused
./usr/share/pyshared/Bio/Graphics/Distribution.py:23: 'renderPS' imported but unused
./usr/share/pyshared/Bio/Graphics/Distribution.py:23: 'renderPDF' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Track.py:381: 'SeqFeature' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Track.py:382: redefinition of unused 'FeatureSet' from line 34
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Track.py:383: redefinition of unused 'GraphSet' from line 35
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_FeatureSet.py:37: '_fontdata' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_FeatureSet.py:38: 'colors' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_FeatureSet.py:151: local variable 'changed' is assigned to but never used
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_FeatureSet.py:284: 'SeqFeature' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Feature.py:32: 'string' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Diagram.py:32: 'renderSVG' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Diagram.py:32: 'renderPS' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Diagram.py:32: 'renderPDF' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Diagram.py:37: redefinition of unused 'renderPM' from line 34
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Diagram.py:38: 'pagesizes' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Diagram.py:46: 'sys' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/__init__.py:15: 'Diagram' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/__init__.py:16: 'Track' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/__init__.py:17: 'FeatureSet' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/__init__.py:18: 'GraphSet' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_CircularDrawer.py:30: 'from reportlab.graphics.shapes import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_CircularDrawer.py:32: '_fontdata' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_CircularDrawer.py:40: 'asin' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_CircularDrawer.py:40: 'ceil' imported but unused
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_CircularDrawer.py:575: local variable 'data' is assigned to but never used
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_CircularDrawer.py:632: local variable 'midval' is assigned to but never used
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_CircularDrawer.py:634: local variable 'trackheight' is assigned to but never used
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_LinearDrawer.py:30: 'from reportlab.graphics.shapes import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_LinearDrawer.py:602: local variable 'tctr' is assigned to but never used
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_LinearDrawer.py:904: local variable 'tempval' is assigned to but never used
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_LinearDrawer.py:937: local variable 'midval' is assigned to but never used
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_LinearDrawer.py:939: local variable 'trackheight' is assigned to but never used
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_LinearDrawer.py:1018: local variable 'data' is assigned to but never used
./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py:45: 'from reportlab.graphics.shapes import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Application/__init__.py:23: 'StringIO' imported but unused
./usr/share/pyshared/Bio/Application/__init__.py:32: redefinition of unused '_ProcessCalledError' from line 29
./usr/share/pyshared/Bio/Application/__init__.py:34: 'File' imported but unused
./usr/share/pyshared/Bio/PopGen/Async/Local.py:12: 'FileRetriever' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Async.py:11: 'debug' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Async.py:12: 'exit' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Async.py:14: 'tarfile' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Async.py:15: 'tempfile' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Async.py:17: 'SimCoalController' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Cache.py:9: 'debug' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Cache.py:10: 'exit' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Cache.py:13: 'tempfile' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Template.py:6: 'sqrt' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Template.py:7: 'exit' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Template.py:7: 'argv' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Template.py:8: 'mkdir' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Controller.py:13: 'tempfile' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Controller.py:14: 'copyfile' imported but unused
./usr/share/pyshared/Bio/PopGen/SimCoal/Controller.py:15: 'debug' imported but unused
./usr/share/pyshared/Bio/PopGen/FDist/__init__.py:97: 'from Bio.ParserSupport import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/PopGen/FDist/Controller.py:17: 'tempfile' imported but unused
./usr/share/pyshared/Bio/PopGen/FDist/Controller.py:19: 'copyfile' imported but unused
./usr/share/pyshared/Bio/PopGen/FDist/Controller.py:20: 'random' imported but unused
./usr/share/pyshared/Bio/PopGen/FDist/Controller.py:54: local variable 'exec_counts' is assigned to but never used
./usr/share/pyshared/Bio/PopGen/FDist/Controller.py:91: local variable 'curr_dir' is assigned to but never used
./usr/share/pyshared/Bio/PopGen/FDist/Controller.py:233: local variable 'old_fst' is assigned to but never used
./usr/share/pyshared/Bio/PopGen/FDist/Controller.py:268: local variable 'curr_dir' is assigned to but never used
./usr/share/pyshared/Bio/PopGen/FDist/Utils.py:7: 'os' imported but unused
./usr/share/pyshared/Bio/PopGen/FDist/Utils.py:8: 'GenePop' imported but unused
./usr/share/pyshared/Bio/PopGen/GenePop/LargeFileParser.py:20: 'deepcopy' imported but unused
./usr/share/pyshared/Bio/PopGen/GenePop/FileParser.py:24: 'deepcopy' imported but unused
./usr/share/pyshared/Bio/PopGen/GenePop/FileParser.py:176: local variable 'marker_len' is assigned to but never used
./usr/share/pyshared/Bio/PopGen/GenePop/Controller.py:16: 'subprocess' imported but unused
./usr/share/pyshared/Bio/PopGen/GenePop/Controller.py:17: 'sys' imported but unused
./usr/share/pyshared/Bio/PopGen/GenePop/Controller.py:18: 'tempfile' imported but unused
./usr/share/pyshared/Bio/PopGen/GenePop/Controller.py:20: '_Option' imported but unused
./usr/share/pyshared/Bio/PopGen/GenePop/Utils.py:7: 'GenePop' imported but unused
./usr/share/pyshared/Bio/PopGen/GenePop/Utils.py:8: 'deepcopy' imported but unused
./usr/share/pyshared/Bio/FSSP/__init__.py:15: 'Generic' imported but unused
./usr/share/pyshared/Bio/FSSP/__init__.py:16: 'Alphabet' imported but unused
./usr/share/pyshared/Bio/FSSP/FSSPTools.py:5: 'time' imported but unused
./usr/share/pyshared/Bio/Align/Applications/_TCoffee.py:8: '_Argument' imported but unused
./usr/share/pyshared/Bio/Align/Applications/_Probcons.py:8: 'types' imported but unused
./usr/share/pyshared/Bio/Align/Applications/__init__.py:6: 'MuscleCommandline' imported but unused
./usr/share/pyshared/Bio/Align/Applications/__init__.py:7: 'ClustalwCommandline' imported but unused
./usr/share/pyshared/Bio/Align/Applications/__init__.py:8: 'PrankCommandline' imported but unused
./usr/share/pyshared/Bio/Align/Applications/__init__.py:9: 'MafftCommandline' imported but unused
./usr/share/pyshared/Bio/Align/Applications/__init__.py:10: 'DialignCommandline' imported but unused
./usr/share/pyshared/Bio/Align/Applications/__init__.py:11: 'ProbconsCommandline' imported but unused
./usr/share/pyshared/Bio/Align/Applications/__init__.py:12: 'TCoffeeCommandline' imported but unused
./usr/share/pyshared/Bio/SVDSuperimposer/__init__.py:8: 'from SVDSuperimposer import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/ExPASy/ScanProsite.py:2: 'expatreader' imported but unused
./usr/share/pyshared/Bio/ExPASy/ScanProsite.py:2: 'make_parser' imported but unused
./usr/share/pyshared/Bio/ExPASy/ScanProsite.py:4: 'SAXParseException' imported but unused
./usr/share/pyshared/Bio/UniGene/UniGene.py:21: 'operator' imported but unused
./usr/share/pyshared/Bio/UniGene/UniGene.py:22: 'urllib' imported but unused
./usr/share/pyshared/Bio/UniGene/__init__.py:328: 'from Bio.ParserSupport import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/UniGene/__init__.py:558: redefinition of function 'GENE_ID' from line 554
./usr/share/pyshared/Bio/HMM/DynamicProgramming.py:130: local variable 'first_letter' is assigned to but never used
./usr/share/pyshared/Bio/HMM/Utilities.py:39: local variable 'extension' is assigned to but never used
./usr/share/pyshared/Bio/HMM/MarkovModel.py:194: local variable 'pseudcount' is assigned to but never used
./usr/share/pyshared/Bio/KDTree/__init__.py:10: 'KDTree' imported but unused
./usr/share/pyshared/Bio/KDTree/KDTree.py:17: 'dtype' imported but unused
./usr/share/pyshared/Bio/KDTree/KDTree.py:221: redefinition of unused 'random' from line 18
./usr/share/pyshared/Bio/AlignIO/NexusIO.py:17: 'Seq' imported but unused
./usr/share/pyshared/Bio/AlignIO/FastaIO.py:202: local variable 'align_consensus' is assigned to but never used
./usr/share/pyshared/Bio/AlignIO/PhylipIO.py:25: 'single_letter_alphabet' imported but unused
./usr/share/pyshared/Bio/AlignIO/PhylipIO.py:131: local variable 'number_of_seqs' is assigned to but never used
./usr/share/pyshared/Bio/AlignIO/PhylipIO.py:132: local variable 'length_of_seqs' is assigned to but never used
./usr/share/pyshared/Bio/AlignIO/PhylipIO.py:156: local variable 'length_of_seqs' is assigned to but never used
./usr/share/pyshared/Bio/AlignIO/__init__.py:137: 'StringIO' imported but unused
./usr/share/pyshared/Bio/AlignIO/__init__.py:138: 'Seq' imported but unused
./usr/share/pyshared/Bio/AlignIO/__init__.py:139: 'SeqRecord' imported but unused
./usr/share/pyshared/Bio/AlignIO/Interfaces.py:12: 'Gapped' imported but unused
./usr/share/pyshared/Bio/Entrez/Parser.py:499: undefined name 'RuntimeException'
./usr/share/pyshared/Bio/Entrez/__init__.py:66: 'os' imported but unused
./usr/share/pyshared/Bio/GA/Crossover/General.py:10: 'Organism' imported but unused
./usr/share/pyshared/Bio/GA/Crossover/GeneralPoint.py:85: local variable 'xlocs' is assigned to but never used
./usr/share/pyshared/Bio/GA/Selection/Diversity.py:11: 'MutableSeq' imported but unused
./usr/share/pyshared/Bio/GA/Selection/Diversity.py:15: 'TournamentSelection' imported but unused
./usr/share/pyshared/Bio/GA/Mutation/General.py:7: 'Organism' imported but unused
./usr/share/pyshared/Bio/GenBank/Scanner.py:29: 'os' imported but unused
./usr/share/pyshared/Bio/GenBank/Scanner.py:33: 'generic_alphabet' imported but unused
./usr/share/pyshared/Bio/GenBank/Scanner.py:656: local variable 'EMBL_SPACER' is assigned to but never used
./usr/share/pyshared/Bio/GenBank/Scanner.py:932: local variable 'GENBANK_SPACER' is assigned to but never used
./usr/share/pyshared/Bio/GenBank/__init__.py:45: 'cStringIO' imported but unused
./usr/share/pyshared/Bio/GenBank/__init__.py:51: 'Entrez' imported but unused
./usr/share/pyshared/Bio/Phylo/BaseTree.py:18: 'warnings' imported but unused
./usr/share/pyshared/Bio/Phylo/BaseTree.py:19: 'Bio' imported but unused
./usr/share/pyshared/Bio/Phylo/PhyloXML.py:22: 'Bio' imported but unused
./usr/share/pyshared/Bio/Phylo/PhyloXMLIO.py:31: redefinition of unused 'ElementTree' from line 28
./usr/share/pyshared/Bio/Phylo/PhyloXMLIO.py:35: redefinition of unused 'ElementTree' from line 31
./usr/share/pyshared/Bio/Phylo/PhyloXMLIO.py:39: redefinition of unused 'ElementTree' from line 35
./usr/share/pyshared/Bio/Phylo/PhyloXMLIO.py:42: redefinition of unused 'ElementTree' from line 39
./usr/share/pyshared/Bio/Phylo/PhyloXMLIO.py:45: redefinition of unused 'ElementTree' from line 42
./usr/share/pyshared/Bio/Phylo/NewickIO.py:219: redefinition of function 'make_info_string' from line 214
./usr/share/pyshared/Bio/Phylo/NewickIO.py:228: redefinition of function 'make_info_string' from line 219
./usr/share/pyshared/Bio/Phylo/NewickIO.py:233: redefinition of function 'make_info_string' from line 228
./usr/share/pyshared/Bio/Phylo/__init__.py:12: 'write' imported but unused
./usr/share/pyshared/Bio/Phylo/__init__.py:12: 'convert' imported but unused
./usr/share/pyshared/Bio/Phylo/__init__.py:12: 'read' imported but unused
./usr/share/pyshared/Bio/Phylo/__init__.py:12: 'parse' imported but unused
./usr/share/pyshared/Bio/Phylo/__init__.py:13: 'to_networkx' imported but unused
./usr/share/pyshared/Bio/Phylo/__init__.py:13: 'draw_graphviz' imported but unused
./usr/share/pyshared/Bio/Phylo/__init__.py:13: 'draw_ascii' imported but unused
./usr/share/pyshared/Bio/Phylo/Newick.py:12: 'warnings' imported but unused
./usr/share/pyshared/Bio/Pathway/__init__.py:34: 'from Bio.Pathway.Rep.HashSet import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Pathway/__init__.py:35: 'from Bio.Pathway.Rep.MultiGraph import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Pathway/Rep/Graph.py:7: 'from Bio.Pathway.Rep.HashSet import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Pathway/Rep/MultiGraph.py:7: 'from Bio.Pathway.Rep.HashSet import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Medline/__init__.py:130: undefined name 'key'
./usr/share/pyshared/Bio/Sequencing/Applications/__init__.py:3: 'NovoalignCommandline' imported but unused
./usr/share/pyshared/Bio/PDB/StructureAlignment.py:29: local variable 's1' is assigned to but never used
./usr/share/pyshared/Bio/PDB/StructureAlignment.py:30: local variable 's2' is assigned to but never used
./usr/share/pyshared/Bio/PDB/MMCIF2Dict.py:40: local variable 'SEMICOLONS' is assigned to but never used
./usr/share/pyshared/Bio/PDB/MMCIF2Dict.py:41: local variable 'DOUBLEQUOTED' is assigned to but never used
./usr/share/pyshared/Bio/PDB/MMCIF2Dict.py:42: local variable 'QUOTED' is assigned to but never used
./usr/share/pyshared/Bio/PDB/MMCIF2Dict.py:43: local variable 'SIMPLE' is assigned to but never used
./usr/share/pyshared/Bio/PDB/MMCIF2Dict.py:50: local variable 'current_name' is assigned to but never used
./usr/share/pyshared/Bio/PDB/NACCESS.py:53: local variable 'stdout' is assigned to but never used
./usr/share/pyshared/Bio/PDB/NACCESS.py:55: local variable 'stderr' is assigned to but never used
./usr/share/pyshared/Bio/PDB/NACCESS.py:99: local variable 'atom_serial' is assigned to but never used
./usr/share/pyshared/Bio/PDB/NACCESS.py:102: local variable 'altloc' is assigned to but never used
./usr/share/pyshared/Bio/PDB/NACCESS.py:103: local variable 'resname' is assigned to but never used
./usr/share/pyshared/Bio/PDB/NACCESS.py:110: local variable 'vdw' is assigned to but never used
./usr/share/pyshared/Bio/PDB/NACCESS.py:122: local variable 'res_list' is assigned to but never used
./usr/share/pyshared/Bio/PDB/NACCESS.py:151: local variable 'atom_list' is assigned to but never used
./usr/share/pyshared/Bio/PDB/NACCESS.py:175: redefinition of unused 'sys' from line 8
./usr/share/pyshared/Bio/PDB/__init__.py:15: 'PDBParser' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:19: 'MMCIFParser' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:25: 'PDBList' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:28: 'parse_pdb_header' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:31: 'standard_aa_names' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:31: 'PPBuilder' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:31: 'CaPPBuilder' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:31: 'is_aa' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:33: 'to_one_letter_code' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:36: 'PDBIO' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:36: 'Select' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:40: 'Selection' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:43: 'Superimposer' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:46: 'rotaxis2m' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:46: 'm2rotaxis' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:46: 'rotmat' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:46: 'vector_to_axis' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:46: 'calc_dihedral' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:46: 'refmat' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:46: 'Vector' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:46: 'calc_angle' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:46: 'rotaxis' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:50: 'StructureAlignment' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:54: 'make_dssp_dict' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:54: 'DSSP' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:58: 'ResidueDepth' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:58: 'get_surface' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:61: 'HSExposureCA' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:61: 'ExposureCN' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:61: 'HSExposureCB' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:64: 'FragmentMapper' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:67: 'extract' imported but unused
./usr/share/pyshared/Bio/PDB/__init__.py:72: 'NeighborSearch' imported but unused
./usr/share/pyshared/Bio/PDB/Polypeptide.py:57: 'Residue' imported but unused
./usr/share/pyshared/Bio/PDB/Polypeptide.py:57: 'DisorderedResidue' imported but unused
./usr/share/pyshared/Bio/PDB/Entity.py:8: 'PDBException' imported but unused
./usr/share/pyshared/Bio/PDB/parse_pdb_header.py:147: local variable 'src_molid' is assigned to but never used
./usr/share/pyshared/Bio/InterPro/__init__.py:124: local variable 'val' is assigned to but never used
./usr/share/pyshared/Bio/Geo/Record.py:57: undefined name 'val'
./usr/share/pyshared/Bio/Geo/Record.py:58: undefined name 'val'
./usr/share/pyshared/Bio/Cluster/__init__.py:3: 'from Bio.Cluster.cluster import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Blast/NCBIXML.py:690: 'os' imported but unused
./usr/share/pyshared/Bio/Blast/NCBIStandalone.py:59: 'from Bio.ParserSupport import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Blast/NCBIStandalone.py:61: '_escape_filename' imported but unused
./usr/share/pyshared/Bio/Blast/NCBIStandalone.py:2166: local variable 'msg' is assigned to but never used
./usr/share/pyshared/Bio/Blast/NCBIWWW.py:18: 'sys' imported but unused
./usr/share/pyshared/Bio/Blast/NCBIWWW.py:22: redefinition of unused 'StringIO' from line 20
./usr/share/pyshared/Bio/NMR/NOEtools.py:43: local variable 'aveDetectedPPM' is assigned to but never used
./usr/share/pyshared/Bio/NMR/xpktools.py:39: local variable 'e' is assigned to but never used
./usr/share/pyshared/Bio/NMR/xpktools.py:119: local variable 'e' is assigned to but never used
./usr/share/pyshared/Bio/NMR/xpktools.py:128: local variable 'e' is assigned to but never used
./usr/share/pyshared/Bio/SubsMat/MatrixInfo.py:87: redefinition of function '_temp' from line 28
./usr/share/pyshared/Bio/SubsMat/__init__.py:116: 'warnings' imported but unused
./usr/share/pyshared/Bio/SubsMat/__init__.py:119: 'Bio' imported but unused
./usr/share/pyshared/Bio/SCOP/Cla.py:22: 'from Residues import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/SCOP/__init__.py:50: 'from types import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/SCOP/__init__.py:56: 'from Residues import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Crystal/__init__.py:96: local variable 'i' is assigned to but never used
./usr/share/pyshared/Bio/Restriction/PrintFormat.py:12: 'itertools' imported but unused
./usr/share/pyshared/Bio/Restriction/__init__.py:61: 'from Bio.Restriction.Restriction import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Restriction/Restriction.py:85: 'IUPAC' imported but unused
./usr/share/pyshared/Bio/Restriction/Restriction.py:90: 'from Bio.Restriction.RanaConfig import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Restriction/Restriction.py:244: local variable 'err' is assigned to but never used
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:43: redefinition of function '_temp' from line 21
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:65: redefinition of function '_temp' from line 43
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:87: redefinition of function '_temp' from line 65
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:109: redefinition of function '_temp' from line 87
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:131: redefinition of function '_temp' from line 109
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:153: redefinition of function '_temp' from line 131
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:175: redefinition of function '_temp' from line 153
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:197: redefinition of function '_temp' from line 175
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:219: redefinition of function '_temp' from line 197
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:241: redefinition of function '_temp' from line 219
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:263: redefinition of function '_temp' from line 241
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:285: redefinition of function '_temp' from line 263
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:307: redefinition of function '_temp' from line 285
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:329: redefinition of function '_temp' from line 307
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:351: redefinition of function '_temp' from line 329
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:373: redefinition of function '_temp' from line 351
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:395: redefinition of function '_temp' from line 373
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:417: redefinition of function '_temp' from line 395
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:439: redefinition of function '_temp' from line 417
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:461: redefinition of function '_temp' from line 439
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:483: redefinition of function '_temp' from line 461
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:505: redefinition of function '_temp' from line 483
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:527: redefinition of function '_temp' from line 505
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:549: redefinition of function '_temp' from line 527
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:571: redefinition of function '_temp' from line 549
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:593: redefinition of function '_temp' from line 571
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:615: redefinition of function '_temp' from line 593
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:637: redefinition of function '_temp' from line 615
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:659: redefinition of function '_temp' from line 637
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:681: redefinition of function '_temp' from line 659
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:703: redefinition of function '_temp' from line 681
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:725: redefinition of function '_temp' from line 703
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:747: redefinition of function '_temp' from line 725
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:769: redefinition of function '_temp' from line 747
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:791: redefinition of function '_temp' from line 769
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:813: redefinition of function '_temp' from line 791
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:835: redefinition of function '_temp' from line 813
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:857: redefinition of function '_temp' from line 835
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:879: redefinition of function '_temp' from line 857
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:901: redefinition of function '_temp' from line 879
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:923: redefinition of function '_temp' from line 901
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:945: redefinition of function '_temp' from line 923
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:967: redefinition of function '_temp' from line 945
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:989: redefinition of function '_temp' from line 967
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1011: redefinition of function '_temp' from line 989
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1033: redefinition of function '_temp' from line 1011
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1055: redefinition of function '_temp' from line 1033
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1077: redefinition of function '_temp' from line 1055
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1099: redefinition of function '_temp' from line 1077
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1121: redefinition of function '_temp' from line 1099
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1143: redefinition of function '_temp' from line 1121
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1165: redefinition of function '_temp' from line 1143
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1187: redefinition of function '_temp' from line 1165
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1209: redefinition of function '_temp' from line 1187
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1231: redefinition of function '_temp' from line 1209
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1253: redefinition of function '_temp' from line 1231
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1275: redefinition of function '_temp' from line 1253
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1297: redefinition of function '_temp' from line 1275
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1319: redefinition of function '_temp' from line 1297
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1341: redefinition of function '_temp' from line 1319
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1363: redefinition of function '_temp' from line 1341
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1385: redefinition of function '_temp' from line 1363
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1407: redefinition of function '_temp' from line 1385
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1429: redefinition of function '_temp' from line 1407
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1451: redefinition of function '_temp' from line 1429
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1473: redefinition of function '_temp' from line 1451
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1495: redefinition of function '_temp' from line 1473
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1517: redefinition of function '_temp' from line 1495
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1539: redefinition of function '_temp' from line 1517
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1561: redefinition of function '_temp' from line 1539
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1583: redefinition of function '_temp' from line 1561
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1605: redefinition of function '_temp' from line 1583
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1627: redefinition of function '_temp' from line 1605
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1649: redefinition of function '_temp' from line 1627
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1671: redefinition of function '_temp' from line 1649
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1693: redefinition of function '_temp' from line 1671
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1715: redefinition of function '_temp' from line 1693
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1737: redefinition of function '_temp' from line 1715
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1759: redefinition of function '_temp' from line 1737
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1781: redefinition of function '_temp' from line 1759
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1803: redefinition of function '_temp' from line 1781
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1825: redefinition of function '_temp' from line 1803
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1847: redefinition of function '_temp' from line 1825
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1869: redefinition of function '_temp' from line 1847
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1891: redefinition of function '_temp' from line 1869
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1913: redefinition of function '_temp' from line 1891
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1935: redefinition of function '_temp' from line 1913
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1957: redefinition of function '_temp' from line 1935
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:1979: redefinition of function '_temp' from line 1957
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2001: redefinition of function '_temp' from line 1979
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2023: redefinition of function '_temp' from line 2001
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2045: redefinition of function '_temp' from line 2023
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2067: redefinition of function '_temp' from line 2045
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2089: redefinition of function '_temp' from line 2067
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2111: redefinition of function '_temp' from line 2089
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2133: redefinition of function '_temp' from line 2111
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2155: redefinition of function '_temp' from line 2133
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2177: redefinition of function '_temp' from line 2155
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2199: redefinition of function '_temp' from line 2177
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2221: redefinition of function '_temp' from line 2199
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2243: redefinition of function '_temp' from line 2221
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2265: redefinition of function '_temp' from line 2243
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2287: redefinition of function '_temp' from line 2265
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2309: redefinition of function '_temp' from line 2287
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2331: redefinition of function '_temp' from line 2309
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2353: redefinition of function '_temp' from line 2331
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2375: redefinition of function '_temp' from line 2353
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2397: redefinition of function '_temp' from line 2375
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2419: redefinition of function '_temp' from line 2397
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2441: redefinition of function '_temp' from line 2419
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2463: redefinition of function '_temp' from line 2441
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2485: redefinition of function '_temp' from line 2463
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2507: redefinition of function '_temp' from line 2485
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2529: redefinition of function '_temp' from line 2507
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2551: redefinition of function '_temp' from line 2529
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2573: redefinition of function '_temp' from line 2551
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2595: redefinition of function '_temp' from line 2573
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2617: redefinition of function '_temp' from line 2595
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2639: redefinition of function '_temp' from line 2617
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2661: redefinition of function '_temp' from line 2639
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2683: redefinition of function '_temp' from line 2661
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2705: redefinition of function '_temp' from line 2683
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2727: redefinition of function '_temp' from line 2705
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2749: redefinition of function '_temp' from line 2727
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2771: redefinition of function '_temp' from line 2749
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2793: redefinition of function '_temp' from line 2771
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2815: redefinition of function '_temp' from line 2793
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2837: redefinition of function '_temp' from line 2815
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2859: redefinition of function '_temp' from line 2837
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2881: redefinition of function '_temp' from line 2859
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2903: redefinition of function '_temp' from line 2881
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2925: redefinition of function '_temp' from line 2903
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2947: redefinition of function '_temp' from line 2925
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2969: redefinition of function '_temp' from line 2947
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:2991: redefinition of function '_temp' from line 2969
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3013: redefinition of function '_temp' from line 2991
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3035: redefinition of function '_temp' from line 3013
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3057: redefinition of function '_temp' from line 3035
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3079: redefinition of function '_temp' from line 3057
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3101: redefinition of function '_temp' from line 3079
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3123: redefinition of function '_temp' from line 3101
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3145: redefinition of function '_temp' from line 3123
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3167: redefinition of function '_temp' from line 3145
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3189: redefinition of function '_temp' from line 3167
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3211: redefinition of function '_temp' from line 3189
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3233: redefinition of function '_temp' from line 3211
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3255: redefinition of function '_temp' from line 3233
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3277: redefinition of function '_temp' from line 3255
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3299: redefinition of function '_temp' from line 3277
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3321: redefinition of function '_temp' from line 3299
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3343: redefinition of function '_temp' from line 3321
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3365: redefinition of function '_temp' from line 3343
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3387: redefinition of function '_temp' from line 3365
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3409: redefinition of function '_temp' from line 3387
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3431: redefinition of function '_temp' from line 3409
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3453: redefinition of function '_temp' from line 3431
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3475: redefinition of function '_temp' from line 3453
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3497: redefinition of function '_temp' from line 3475
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3519: redefinition of function '_temp' from line 3497
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3541: redefinition of function '_temp' from line 3519
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3563: redefinition of function '_temp' from line 3541
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3585: redefinition of function '_temp' from line 3563
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3607: redefinition of function '_temp' from line 3585
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3629: redefinition of function '_temp' from line 3607
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3651: redefinition of function '_temp' from line 3629
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3673: redefinition of function '_temp' from line 3651
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3695: redefinition of function '_temp' from line 3673
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3717: redefinition of function '_temp' from line 3695
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3739: redefinition of function '_temp' from line 3717
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3761: redefinition of function '_temp' from line 3739
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3783: redefinition of function '_temp' from line 3761
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3805: redefinition of function '_temp' from line 3783
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3827: redefinition of function '_temp' from line 3805
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3849: redefinition of function '_temp' from line 3827
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3871: redefinition of function '_temp' from line 3849
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3893: redefinition of function '_temp' from line 3871
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3915: redefinition of function '_temp' from line 3893
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3937: redefinition of function '_temp' from line 3915
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3959: redefinition of function '_temp' from line 3937
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:3981: redefinition of function '_temp' from line 3959
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4003: redefinition of function '_temp' from line 3981
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4025: redefinition of function '_temp' from line 4003
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4047: redefinition of function '_temp' from line 4025
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4069: redefinition of function '_temp' from line 4047
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4091: redefinition of function '_temp' from line 4069
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4113: redefinition of function '_temp' from line 4091
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4135: redefinition of function '_temp' from line 4113
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4157: redefinition of function '_temp' from line 4135
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4179: redefinition of function '_temp' from line 4157
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4201: redefinition of function '_temp' from line 4179
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4223: redefinition of function '_temp' from line 4201
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4245: redefinition of function '_temp' from line 4223
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4267: redefinition of function '_temp' from line 4245
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4289: redefinition of function '_temp' from line 4267
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4311: redefinition of function '_temp' from line 4289
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4333: redefinition of function '_temp' from line 4311
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4355: redefinition of function '_temp' from line 4333
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4377: redefinition of function '_temp' from line 4355
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4399: redefinition of function '_temp' from line 4377
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4421: redefinition of function '_temp' from line 4399
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4443: redefinition of function '_temp' from line 4421
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4465: redefinition of function '_temp' from line 4443
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4487: redefinition of function '_temp' from line 4465
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4509: redefinition of function '_temp' from line 4487
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4531: redefinition of function '_temp' from line 4509
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4553: redefinition of function '_temp' from line 4531
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4575: redefinition of function '_temp' from line 4553
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4597: redefinition of function '_temp' from line 4575
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4619: redefinition of function '_temp' from line 4597
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4641: redefinition of function '_temp' from line 4619
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4663: redefinition of function '_temp' from line 4641
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4685: redefinition of function '_temp' from line 4663
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4707: redefinition of function '_temp' from line 4685
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4729: redefinition of function '_temp' from line 4707
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4751: redefinition of function '_temp' from line 4729
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4773: redefinition of function '_temp' from line 4751
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4795: redefinition of function '_temp' from line 4773
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4817: redefinition of function '_temp' from line 4795
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4839: redefinition of function '_temp' from line 4817
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4861: redefinition of function '_temp' from line 4839
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4883: redefinition of function '_temp' from line 4861
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4905: redefinition of function '_temp' from line 4883
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4927: redefinition of function '_temp' from line 4905
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4949: redefinition of function '_temp' from line 4927
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4971: redefinition of function '_temp' from line 4949
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:4993: redefinition of function '_temp' from line 4971
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5015: redefinition of function '_temp' from line 4993
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5037: redefinition of function '_temp' from line 5015
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5059: redefinition of function '_temp' from line 5037
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5081: redefinition of function '_temp' from line 5059
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5103: redefinition of function '_temp' from line 5081
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5125: redefinition of function '_temp' from line 5103
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5147: redefinition of function '_temp' from line 5125
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5169: redefinition of function '_temp' from line 5147
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5191: redefinition of function '_temp' from line 5169
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5213: redefinition of function '_temp' from line 5191
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5235: redefinition of function '_temp' from line 5213
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5257: redefinition of function '_temp' from line 5235
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5279: redefinition of function '_temp' from line 5257
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5301: redefinition of function '_temp' from line 5279
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5323: redefinition of function '_temp' from line 5301
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5345: redefinition of function '_temp' from line 5323
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5367: redefinition of function '_temp' from line 5345
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5389: redefinition of function '_temp' from line 5367
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5411: redefinition of function '_temp' from line 5389
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5433: redefinition of function '_temp' from line 5411
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5455: redefinition of function '_temp' from line 5433
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5477: redefinition of function '_temp' from line 5455
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5499: redefinition of function '_temp' from line 5477
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5521: redefinition of function '_temp' from line 5499
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5543: redefinition of function '_temp' from line 5521
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5565: redefinition of function '_temp' from line 5543
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5587: redefinition of function '_temp' from line 5565
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5609: redefinition of function '_temp' from line 5587
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5631: redefinition of function '_temp' from line 5609
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5653: redefinition of function '_temp' from line 5631
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5675: redefinition of function '_temp' from line 5653
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5697: redefinition of function '_temp' from line 5675
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5719: redefinition of function '_temp' from line 5697
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5741: redefinition of function '_temp' from line 5719
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5763: redefinition of function '_temp' from line 5741
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5785: redefinition of function '_temp' from line 5763
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5807: redefinition of function '_temp' from line 5785
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5829: redefinition of function '_temp' from line 5807
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5851: redefinition of function '_temp' from line 5829
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5873: redefinition of function '_temp' from line 5851
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5895: redefinition of function '_temp' from line 5873
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5917: redefinition of function '_temp' from line 5895
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5939: redefinition of function '_temp' from line 5917
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5961: redefinition of function '_temp' from line 5939
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:5983: redefinition of function '_temp' from line 5961
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6005: redefinition of function '_temp' from line 5983
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6027: redefinition of function '_temp' from line 6005
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6049: redefinition of function '_temp' from line 6027
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6071: redefinition of function '_temp' from line 6049
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6093: redefinition of function '_temp' from line 6071
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6115: redefinition of function '_temp' from line 6093
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6137: redefinition of function '_temp' from line 6115
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6159: redefinition of function '_temp' from line 6137
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6181: redefinition of function '_temp' from line 6159
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6203: redefinition of function '_temp' from line 6181
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6225: redefinition of function '_temp' from line 6203
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6247: redefinition of function '_temp' from line 6225
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6269: redefinition of function '_temp' from line 6247
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6291: redefinition of function '_temp' from line 6269
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6313: redefinition of function '_temp' from line 6291
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6335: redefinition of function '_temp' from line 6313
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6357: redefinition of function '_temp' from line 6335
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6379: redefinition of function '_temp' from line 6357
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6401: redefinition of function '_temp' from line 6379
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6423: redefinition of function '_temp' from line 6401
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6445: redefinition of function '_temp' from line 6423
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6467: redefinition of function '_temp' from line 6445
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6489: redefinition of function '_temp' from line 6467
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6511: redefinition of function '_temp' from line 6489
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6533: redefinition of function '_temp' from line 6511
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6555: redefinition of function '_temp' from line 6533
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6577: redefinition of function '_temp' from line 6555
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6599: redefinition of function '_temp' from line 6577
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6621: redefinition of function '_temp' from line 6599
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6643: redefinition of function '_temp' from line 6621
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6665: redefinition of function '_temp' from line 6643
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6687: redefinition of function '_temp' from line 6665
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6709: redefinition of function '_temp' from line 6687
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6731: redefinition of function '_temp' from line 6709
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6753: redefinition of function '_temp' from line 6731
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6775: redefinition of function '_temp' from line 6753
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6797: redefinition of function '_temp' from line 6775
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6819: redefinition of function '_temp' from line 6797
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6841: redefinition of function '_temp' from line 6819
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6863: redefinition of function '_temp' from line 6841
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6885: redefinition of function '_temp' from line 6863
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6907: redefinition of function '_temp' from line 6885
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6929: redefinition of function '_temp' from line 6907
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6951: redefinition of function '_temp' from line 6929
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6973: redefinition of function '_temp' from line 6951
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:6995: redefinition of function '_temp' from line 6973
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7017: redefinition of function '_temp' from line 6995
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7039: redefinition of function '_temp' from line 7017
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7061: redefinition of function '_temp' from line 7039
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7083: redefinition of function '_temp' from line 7061
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7105: redefinition of function '_temp' from line 7083
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7127: redefinition of function '_temp' from line 7105
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7149: redefinition of function '_temp' from line 7127
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7171: redefinition of function '_temp' from line 7149
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7193: redefinition of function '_temp' from line 7171
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7215: redefinition of function '_temp' from line 7193
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7237: redefinition of function '_temp' from line 7215
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7259: redefinition of function '_temp' from line 7237
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7281: redefinition of function '_temp' from line 7259
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7303: redefinition of function '_temp' from line 7281
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7325: redefinition of function '_temp' from line 7303
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7347: redefinition of function '_temp' from line 7325
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7369: redefinition of function '_temp' from line 7347
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7391: redefinition of function '_temp' from line 7369
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7413: redefinition of function '_temp' from line 7391
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7435: redefinition of function '_temp' from line 7413
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7457: redefinition of function '_temp' from line 7435
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7479: redefinition of function '_temp' from line 7457
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7501: redefinition of function '_temp' from line 7479
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7523: redefinition of function '_temp' from line 7501
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7545: redefinition of function '_temp' from line 7523
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7567: redefinition of function '_temp' from line 7545
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7589: redefinition of function '_temp' from line 7567
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7611: redefinition of function '_temp' from line 7589
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7633: redefinition of function '_temp' from line 7611
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7655: redefinition of function '_temp' from line 7633
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7677: redefinition of function '_temp' from line 7655
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7699: redefinition of function '_temp' from line 7677
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7721: redefinition of function '_temp' from line 7699
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7743: redefinition of function '_temp' from line 7721
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7765: redefinition of function '_temp' from line 7743
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7787: redefinition of function '_temp' from line 7765
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7809: redefinition of function '_temp' from line 7787
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7831: redefinition of function '_temp' from line 7809
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7853: redefinition of function '_temp' from line 7831
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7875: redefinition of function '_temp' from line 7853
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7897: redefinition of function '_temp' from line 7875
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7919: redefinition of function '_temp' from line 7897
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7941: redefinition of function '_temp' from line 7919
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7963: redefinition of function '_temp' from line 7941
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:7985: redefinition of function '_temp' from line 7963
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8007: redefinition of function '_temp' from line 7985
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8029: redefinition of function '_temp' from line 8007
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8051: redefinition of function '_temp' from line 8029
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8073: redefinition of function '_temp' from line 8051
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8095: redefinition of function '_temp' from line 8073
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8117: redefinition of function '_temp' from line 8095
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8139: redefinition of function '_temp' from line 8117
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8161: redefinition of function '_temp' from line 8139
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8183: redefinition of function '_temp' from line 8161
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8205: redefinition of function '_temp' from line 8183
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8227: redefinition of function '_temp' from line 8205
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8249: redefinition of function '_temp' from line 8227
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8271: redefinition of function '_temp' from line 8249
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8293: redefinition of function '_temp' from line 8271
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8315: redefinition of function '_temp' from line 8293
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8337: redefinition of function '_temp' from line 8315
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8359: redefinition of function '_temp' from line 8337
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8381: redefinition of function '_temp' from line 8359
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8403: redefinition of function '_temp' from line 8381
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8425: redefinition of function '_temp' from line 8403
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8447: redefinition of function '_temp' from line 8425
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8469: redefinition of function '_temp' from line 8447
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8491: redefinition of function '_temp' from line 8469
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8513: redefinition of function '_temp' from line 8491
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8535: redefinition of function '_temp' from line 8513
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8557: redefinition of function '_temp' from line 8535
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8579: redefinition of function '_temp' from line 8557
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8601: redefinition of function '_temp' from line 8579
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8623: redefinition of function '_temp' from line 8601
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8645: redefinition of function '_temp' from line 8623
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8667: redefinition of function '_temp' from line 8645
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8689: redefinition of function '_temp' from line 8667
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8711: redefinition of function '_temp' from line 8689
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8733: redefinition of function '_temp' from line 8711
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8755: redefinition of function '_temp' from line 8733
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8777: redefinition of function '_temp' from line 8755
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8799: redefinition of function '_temp' from line 8777
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8821: redefinition of function '_temp' from line 8799
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8843: redefinition of function '_temp' from line 8821
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8865: redefinition of function '_temp' from line 8843
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8887: redefinition of function '_temp' from line 8865
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8909: redefinition of function '_temp' from line 8887
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8931: redefinition of function '_temp' from line 8909
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8953: redefinition of function '_temp' from line 8931
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8975: redefinition of function '_temp' from line 8953
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:8997: redefinition of function '_temp' from line 8975
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9019: redefinition of function '_temp' from line 8997
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9041: redefinition of function '_temp' from line 9019
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9063: redefinition of function '_temp' from line 9041
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9085: redefinition of function '_temp' from line 9063
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9107: redefinition of function '_temp' from line 9085
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9129: redefinition of function '_temp' from line 9107
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9151: redefinition of function '_temp' from line 9129
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9173: redefinition of function '_temp' from line 9151
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9195: redefinition of function '_temp' from line 9173
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9217: redefinition of function '_temp' from line 9195
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9239: redefinition of function '_temp' from line 9217
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9261: redefinition of function '_temp' from line 9239
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9283: redefinition of function '_temp' from line 9261
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9305: redefinition of function '_temp' from line 9283
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9327: redefinition of function '_temp' from line 9305
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9349: redefinition of function '_temp' from line 9327
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9371: redefinition of function '_temp' from line 9349
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9393: redefinition of function '_temp' from line 9371
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9415: redefinition of function '_temp' from line 9393
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9437: redefinition of function '_temp' from line 9415
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9459: redefinition of function '_temp' from line 9437
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9481: redefinition of function '_temp' from line 9459
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9503: redefinition of function '_temp' from line 9481
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9525: redefinition of function '_temp' from line 9503
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9547: redefinition of function '_temp' from line 9525
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9569: redefinition of function '_temp' from line 9547
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9591: redefinition of function '_temp' from line 9569
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9613: redefinition of function '_temp' from line 9591
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9635: redefinition of function '_temp' from line 9613
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9657: redefinition of function '_temp' from line 9635
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9679: redefinition of function '_temp' from line 9657
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9701: redefinition of function '_temp' from line 9679
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9723: redefinition of function '_temp' from line 9701
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9745: redefinition of function '_temp' from line 9723
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9767: redefinition of function '_temp' from line 9745
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9789: redefinition of function '_temp' from line 9767
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9811: redefinition of function '_temp' from line 9789
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9833: redefinition of function '_temp' from line 9811
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9855: redefinition of function '_temp' from line 9833
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9877: redefinition of function '_temp' from line 9855
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9899: redefinition of function '_temp' from line 9877
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9921: redefinition of function '_temp' from line 9899
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9943: redefinition of function '_temp' from line 9921
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9965: redefinition of function '_temp' from line 9943
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:9987: redefinition of function '_temp' from line 9965
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10009: redefinition of function '_temp' from line 9987
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10031: redefinition of function '_temp' from line 10009
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10053: redefinition of function '_temp' from line 10031
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10075: redefinition of function '_temp' from line 10053
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10097: redefinition of function '_temp' from line 10075
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10119: redefinition of function '_temp' from line 10097
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10141: redefinition of function '_temp' from line 10119
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10163: redefinition of function '_temp' from line 10141
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10185: redefinition of function '_temp' from line 10163
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10207: redefinition of function '_temp' from line 10185
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10229: redefinition of function '_temp' from line 10207
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10251: redefinition of function '_temp' from line 10229
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10273: redefinition of function '_temp' from line 10251
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10295: redefinition of function '_temp' from line 10273
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10317: redefinition of function '_temp' from line 10295
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10339: redefinition of function '_temp' from line 10317
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10361: redefinition of function '_temp' from line 10339
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10383: redefinition of function '_temp' from line 10361
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10405: redefinition of function '_temp' from line 10383
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10427: redefinition of function '_temp' from line 10405
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10449: redefinition of function '_temp' from line 10427
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10471: redefinition of function '_temp' from line 10449
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10493: redefinition of function '_temp' from line 10471
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10515: redefinition of function '_temp' from line 10493
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10537: redefinition of function '_temp' from line 10515
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10559: redefinition of function '_temp' from line 10537
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10581: redefinition of function '_temp' from line 10559
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10603: redefinition of function '_temp' from line 10581
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10625: redefinition of function '_temp' from line 10603
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10647: redefinition of function '_temp' from line 10625
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10669: redefinition of function '_temp' from line 10647
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10691: redefinition of function '_temp' from line 10669
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10713: redefinition of function '_temp' from line 10691
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10735: redefinition of function '_temp' from line 10713
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10757: redefinition of function '_temp' from line 10735
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10779: redefinition of function '_temp' from line 10757
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10801: redefinition of function '_temp' from line 10779
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10823: redefinition of function '_temp' from line 10801
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10845: redefinition of function '_temp' from line 10823
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10867: redefinition of function '_temp' from line 10845
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10889: redefinition of function '_temp' from line 10867
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10911: redefinition of function '_temp' from line 10889
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10933: redefinition of function '_temp' from line 10911
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10955: redefinition of function '_temp' from line 10933
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10977: redefinition of function '_temp' from line 10955
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:10999: redefinition of function '_temp' from line 10977
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11021: redefinition of function '_temp' from line 10999
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11043: redefinition of function '_temp' from line 11021
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11065: redefinition of function '_temp' from line 11043
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11087: redefinition of function '_temp' from line 11065
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11109: redefinition of function '_temp' from line 11087
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11131: redefinition of function '_temp' from line 11109
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11153: redefinition of function '_temp' from line 11131
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11175: redefinition of function '_temp' from line 11153
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11197: redefinition of function '_temp' from line 11175
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11219: redefinition of function '_temp' from line 11197
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11241: redefinition of function '_temp' from line 11219
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11263: redefinition of function '_temp' from line 11241
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11285: redefinition of function '_temp' from line 11263
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11307: redefinition of function '_temp' from line 11285
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11329: redefinition of function '_temp' from line 11307
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11351: redefinition of function '_temp' from line 11329
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11373: redefinition of function '_temp' from line 11351
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11395: redefinition of function '_temp' from line 11373
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11417: redefinition of function '_temp' from line 11395
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11439: redefinition of function '_temp' from line 11417
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11461: redefinition of function '_temp' from line 11439
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11483: redefinition of function '_temp' from line 11461
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11505: redefinition of function '_temp' from line 11483
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11527: redefinition of function '_temp' from line 11505
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11549: redefinition of function '_temp' from line 11527
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11571: redefinition of function '_temp' from line 11549
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11593: redefinition of function '_temp' from line 11571
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11615: redefinition of function '_temp' from line 11593
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11637: redefinition of function '_temp' from line 11615
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11659: redefinition of function '_temp' from line 11637
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11681: redefinition of function '_temp' from line 11659
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11703: redefinition of function '_temp' from line 11681
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11725: redefinition of function '_temp' from line 11703
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11747: redefinition of function '_temp' from line 11725
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11769: redefinition of function '_temp' from line 11747
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11791: redefinition of function '_temp' from line 11769
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11813: redefinition of function '_temp' from line 11791
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11835: redefinition of function '_temp' from line 11813
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11857: redefinition of function '_temp' from line 11835
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11879: redefinition of function '_temp' from line 11857
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11901: redefinition of function '_temp' from line 11879
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11923: redefinition of function '_temp' from line 11901
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11945: redefinition of function '_temp' from line 11923
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11967: redefinition of function '_temp' from line 11945
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:11989: redefinition of function '_temp' from line 11967
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12011: redefinition of function '_temp' from line 11989
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12033: redefinition of function '_temp' from line 12011
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12055: redefinition of function '_temp' from line 12033
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12077: redefinition of function '_temp' from line 12055
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12099: redefinition of function '_temp' from line 12077
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12121: redefinition of function '_temp' from line 12099
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12143: redefinition of function '_temp' from line 12121
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12165: redefinition of function '_temp' from line 12143
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12187: redefinition of function '_temp' from line 12165
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12209: redefinition of function '_temp' from line 12187
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12231: redefinition of function '_temp' from line 12209
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12253: redefinition of function '_temp' from line 12231
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12275: redefinition of function '_temp' from line 12253
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12297: redefinition of function '_temp' from line 12275
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12319: redefinition of function '_temp' from line 12297
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12341: redefinition of function '_temp' from line 12319
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12363: redefinition of function '_temp' from line 12341
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12385: redefinition of function '_temp' from line 12363
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12407: redefinition of function '_temp' from line 12385
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12429: redefinition of function '_temp' from line 12407
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12451: redefinition of function '_temp' from line 12429
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12473: redefinition of function '_temp' from line 12451
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12495: redefinition of function '_temp' from line 12473
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12517: redefinition of function '_temp' from line 12495
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12539: redefinition of function '_temp' from line 12517
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12561: redefinition of function '_temp' from line 12539
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12583: redefinition of function '_temp' from line 12561
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12605: redefinition of function '_temp' from line 12583
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12627: redefinition of function '_temp' from line 12605
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12649: redefinition of function '_temp' from line 12627
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12671: redefinition of function '_temp' from line 12649
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12693: redefinition of function '_temp' from line 12671
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12715: redefinition of function '_temp' from line 12693
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12737: redefinition of function '_temp' from line 12715
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12759: redefinition of function '_temp' from line 12737
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12781: redefinition of function '_temp' from line 12759
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12803: redefinition of function '_temp' from line 12781
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12825: redefinition of function '_temp' from line 12803
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12847: redefinition of function '_temp' from line 12825
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12869: redefinition of function '_temp' from line 12847
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12891: redefinition of function '_temp' from line 12869
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12913: redefinition of function '_temp' from line 12891
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12935: redefinition of function '_temp' from line 12913
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12957: redefinition of function '_temp' from line 12935
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:12979: redefinition of function '_temp' from line 12957
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13001: redefinition of function '_temp' from line 12979
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13023: redefinition of function '_temp' from line 13001
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13045: redefinition of function '_temp' from line 13023
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13067: redefinition of function '_temp' from line 13045
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13089: redefinition of function '_temp' from line 13067
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13111: redefinition of function '_temp' from line 13089
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13133: redefinition of function '_temp' from line 13111
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13155: redefinition of function '_temp' from line 13133
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13177: redefinition of function '_temp' from line 13155
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13199: redefinition of function '_temp' from line 13177
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13221: redefinition of function '_temp' from line 13199
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13243: redefinition of function '_temp' from line 13221
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13265: redefinition of function '_temp' from line 13243
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13287: redefinition of function '_temp' from line 13265
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13309: redefinition of function '_temp' from line 13287
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13331: redefinition of function '_temp' from line 13309
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13353: redefinition of function '_temp' from line 13331
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13375: redefinition of function '_temp' from line 13353
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13397: redefinition of function '_temp' from line 13375
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13419: redefinition of function '_temp' from line 13397
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13441: redefinition of function '_temp' from line 13419
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13463: redefinition of function '_temp' from line 13441
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13485: redefinition of function '_temp' from line 13463
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13507: redefinition of function '_temp' from line 13485
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13529: redefinition of function '_temp' from line 13507
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13551: redefinition of function '_temp' from line 13529
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13573: redefinition of function '_temp' from line 13551
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13595: redefinition of function '_temp' from line 13573
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13617: redefinition of function '_temp' from line 13595
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13639: redefinition of function '_temp' from line 13617
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13661: redefinition of function '_temp' from line 13639
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13683: redefinition of function '_temp' from line 13661
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13705: redefinition of function '_temp' from line 13683
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13727: redefinition of function '_temp' from line 13705
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13749: redefinition of function '_temp' from line 13727
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13771: redefinition of function '_temp' from line 13749
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13793: redefinition of function '_temp' from line 13771
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13815: redefinition of function '_temp' from line 13793
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13837: redefinition of function '_temp' from line 13815
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13859: redefinition of function '_temp' from line 13837
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13881: redefinition of function '_temp' from line 13859
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13903: redefinition of function '_temp' from line 13881
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13925: redefinition of function '_temp' from line 13903
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13947: redefinition of function '_temp' from line 13925
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13969: redefinition of function '_temp' from line 13947
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:13991: redefinition of function '_temp' from line 13969
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14013: redefinition of function '_temp' from line 13991
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14035: redefinition of function '_temp' from line 14013
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14057: redefinition of function '_temp' from line 14035
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14079: redefinition of function '_temp' from line 14057
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14101: redefinition of function '_temp' from line 14079
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14123: redefinition of function '_temp' from line 14101
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14145: redefinition of function '_temp' from line 14123
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14167: redefinition of function '_temp' from line 14145
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14189: redefinition of function '_temp' from line 14167
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14211: redefinition of function '_temp' from line 14189
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14233: redefinition of function '_temp' from line 14211
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14255: redefinition of function '_temp' from line 14233
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14277: redefinition of function '_temp' from line 14255
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14299: redefinition of function '_temp' from line 14277
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14321: redefinition of function '_temp' from line 14299
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14343: redefinition of function '_temp' from line 14321
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14365: redefinition of function '_temp' from line 14343
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14387: redefinition of function '_temp' from line 14365
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14409: redefinition of function '_temp' from line 14387
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14431: redefinition of function '_temp' from line 14409
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14453: redefinition of function '_temp' from line 14431
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14475: redefinition of function '_temp' from line 14453
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14497: redefinition of function '_temp' from line 14475
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14519: redefinition of function '_temp' from line 14497
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14541: redefinition of function '_temp' from line 14519
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14563: redefinition of function '_temp' from line 14541
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14585: redefinition of function '_temp' from line 14563
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14607: redefinition of function '_temp' from line 14585
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14629: redefinition of function '_temp' from line 14607
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14651: redefinition of function '_temp' from line 14629
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14673: redefinition of function '_temp' from line 14651
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14695: redefinition of function '_temp' from line 14673
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14717: redefinition of function '_temp' from line 14695
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14739: redefinition of function '_temp' from line 14717
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14761: redefinition of function '_temp' from line 14739
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14783: redefinition of function '_temp' from line 14761
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14805: redefinition of function '_temp' from line 14783
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14827: redefinition of function '_temp' from line 14805
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14849: redefinition of function '_temp' from line 14827
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14871: redefinition of function '_temp' from line 14849
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14893: redefinition of function '_temp' from line 14871
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14915: redefinition of function '_temp' from line 14893
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14937: redefinition of function '_temp' from line 14915
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14959: redefinition of function '_temp' from line 14937
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:14981: redefinition of function '_temp' from line 14959
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15003: redefinition of function '_temp' from line 14981
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15025: redefinition of function '_temp' from line 15003
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15047: redefinition of function '_temp' from line 15025
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15069: redefinition of function '_temp' from line 15047
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15091: redefinition of function '_temp' from line 15069
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15113: redefinition of function '_temp' from line 15091
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15135: redefinition of function '_temp' from line 15113
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15157: redefinition of function '_temp' from line 15135
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15179: redefinition of function '_temp' from line 15157
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15201: redefinition of function '_temp' from line 15179
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15223: redefinition of function '_temp' from line 15201
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15245: redefinition of function '_temp' from line 15223
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15267: redefinition of function '_temp' from line 15245
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15289: redefinition of function '_temp' from line 15267
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15311: redefinition of function '_temp' from line 15289
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15333: redefinition of function '_temp' from line 15311
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15355: redefinition of function '_temp' from line 15333
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15377: redefinition of function '_temp' from line 15355
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15399: redefinition of function '_temp' from line 15377
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15421: redefinition of function '_temp' from line 15399
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15443: redefinition of function '_temp' from line 15421
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15465: redefinition of function '_temp' from line 15443
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15487: redefinition of function '_temp' from line 15465
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15509: redefinition of function '_temp' from line 15487
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15531: redefinition of function '_temp' from line 15509
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15553: redefinition of function '_temp' from line 15531
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15575: redefinition of function '_temp' from line 15553
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15597: redefinition of function '_temp' from line 15575
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15619: redefinition of function '_temp' from line 15597
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15641: redefinition of function '_temp' from line 15619
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15663: redefinition of function '_temp' from line 15641
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15685: redefinition of function '_temp' from line 15663
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15707: redefinition of function '_temp' from line 15685
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15729: redefinition of function '_temp' from line 15707
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15751: redefinition of function '_temp' from line 15729
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15773: redefinition of function '_temp' from line 15751
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15795: redefinition of function '_temp' from line 15773
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15817: redefinition of function '_temp' from line 15795
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15839: redefinition of function '_temp' from line 15817
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15861: redefinition of function '_temp' from line 15839
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15883: redefinition of function '_temp' from line 15861
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15905: redefinition of function '_temp' from line 15883
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15927: redefinition of function '_temp' from line 15905
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15949: redefinition of function '_temp' from line 15927
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15971: redefinition of function '_temp' from line 15949
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:15993: redefinition of function '_temp' from line 15971
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16015: redefinition of function '_temp' from line 15993
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16037: redefinition of function '_temp' from line 16015
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16059: redefinition of function '_temp' from line 16037
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16081: redefinition of function '_temp' from line 16059
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16103: redefinition of function '_temp' from line 16081
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16125: redefinition of function '_temp' from line 16103
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16147: redefinition of function '_temp' from line 16125
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16169: redefinition of function '_temp' from line 16147
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16191: redefinition of function '_temp' from line 16169
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16213: redefinition of function '_temp' from line 16191
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16235: redefinition of function '_temp' from line 16213
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16257: redefinition of function '_temp' from line 16235
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16279: redefinition of function '_temp' from line 16257
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16301: redefinition of function '_temp' from line 16279
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16323: redefinition of function '_temp' from line 16301
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16345: redefinition of function '_temp' from line 16323
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16367: redefinition of function '_temp' from line 16345
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16389: redefinition of function '_temp' from line 16367
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16411: redefinition of function '_temp' from line 16389
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16433: redefinition of function '_temp' from line 16411
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16455: redefinition of function '_temp' from line 16433
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16477: redefinition of function '_temp' from line 16455
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16499: redefinition of function '_temp' from line 16477
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16521: redefinition of function '_temp' from line 16499
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16543: redefinition of function '_temp' from line 16521
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16565: redefinition of function '_temp' from line 16543
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16588: redefinition of function '_temp' from line 16565
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16595: redefinition of function '_temp' from line 16588
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16602: redefinition of function '_temp' from line 16595
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16609: redefinition of function '_temp' from line 16602
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16616: redefinition of function '_temp' from line 16609
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16623: redefinition of function '_temp' from line 16616
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16630: redefinition of function '_temp' from line 16623
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16637: redefinition of function '_temp' from line 16630
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16644: redefinition of function '_temp' from line 16637
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16651: redefinition of function '_temp' from line 16644
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16658: redefinition of function '_temp' from line 16651
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16665: redefinition of function '_temp' from line 16658
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16672: redefinition of function '_temp' from line 16665
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16679: redefinition of function '_temp' from line 16672
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16686: redefinition of function '_temp' from line 16679
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16693: redefinition of function '_temp' from line 16686
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16700: redefinition of function '_temp' from line 16693
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16707: redefinition of function '_temp' from line 16700
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16714: redefinition of function '_temp' from line 16707
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16722: redefinition of function '_temp' from line 16714
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16729: redefinition of function '_temp' from line 16722
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16736: redefinition of function '_temp' from line 16729
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16743: redefinition of function '_temp' from line 16736
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16750: redefinition of function '_temp' from line 16743
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16757: redefinition of function '_temp' from line 16750
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16764: redefinition of function '_temp' from line 16757
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16771: redefinition of function '_temp' from line 16764
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16778: redefinition of function '_temp' from line 16771
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16785: redefinition of function '_temp' from line 16778
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16792: redefinition of function '_temp' from line 16785
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16799: redefinition of function '_temp' from line 16792
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16806: redefinition of function '_temp' from line 16799
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16813: redefinition of function '_temp' from line 16806
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16820: redefinition of function '_temp' from line 16813
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16827: redefinition of function '_temp' from line 16820
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16834: redefinition of function '_temp' from line 16827
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16841: redefinition of function '_temp' from line 16834
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16848: redefinition of function '_temp' from line 16841
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16855: redefinition of function '_temp' from line 16848
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16862: redefinition of function '_temp' from line 16855
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16869: redefinition of function '_temp' from line 16862
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16876: redefinition of function '_temp' from line 16869
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16883: redefinition of function '_temp' from line 16876
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16890: redefinition of function '_temp' from line 16883
./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py:16897: redefinition of function '_temp' from line 16890
./usr/share/pyshared/Bio/Restriction/RanaConfig.py:10: 'os' imported but unused
./usr/share/pyshared/Bio/Restriction/_Update/Update.py:16: 'sre' imported but unused
./usr/share/pyshared/Bio/Restriction/_Update/Update.py:18: 'gzip' imported but unused
./usr/share/pyshared/Bio/Restriction/_Update/Update.py:21: 'from Bio.Restriction.RanaConfig import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Restriction/_Update/RestrictionCompiler.py:40: 'sre' imported but unused
./usr/share/pyshared/Bio/Restriction/_Update/RestrictionCompiler.py:45: 'site' imported but unused
./usr/share/pyshared/Bio/Restriction/_Update/RestrictionCompiler.py:49: 'IUPAC' imported but unused
./usr/share/pyshared/Bio/Restriction/_Update/RestrictionCompiler.py:58: 'from Bio.Restriction.Restriction import *' used; unable to detect undefined names
./usr/share/pyshared/Bio/Restriction/_Update/RestrictionCompiler.py:305: local variable 'All' is assigned to but never used
./usr/share/pyshared/Bio/Restriction/_Update/RestrictionCompiler.py:448: local variable 'supplier' is assigned to but never used
./usr/share/pyshared/Bio/Restriction/_Update/RestrictionCompiler.py:692: redefinition of unused 'site' from line 45
./usr/share/pyshared/Bio/Restriction/_Update/RestrictionCompiler.py:929: local variable 'oldblock' is assigned to but never used
./usr/share/pyshared/Bio/SeqIO/InsdcIO.py:361: local variable 'i' is assigned to but never used
./usr/share/pyshared/Bio/SeqIO/QualityIO.py:513: redefinition of unused 'warnings' from line 372
./usr/share/pyshared/Bio/SeqIO/_index.py:30: redefinition of unused '_dict_base' from line 28
./usr/share/pyshared/Bio/SeqIO/_index.py:42: redefinition of unused '_sqlite' from line 36
./usr/share/pyshared/Bio/SeqIO/_index.py:45: '_as_string' imported but unused
./usr/share/pyshared/Bio/SeqIO/_index.py:161: redefinition of function 'items' from line 128
./usr/share/pyshared/Bio/SeqIO/_index.py:166: redefinition of function 'values' from line 116
./usr/share/pyshared/Bio/SeqIO/_index.py:171: redefinition of function 'keys' from line 140
./usr/share/pyshared/Bio/SeqIO/_index.py:501: redefinition of function '_parse' from line 496
./usr/share/pyshared/Bio/SeqIO/_index.py:812: local variable 'done' is assigned to but never used
./usr/share/pyshared/Bio/SeqIO/_index.py:902: local variable 'marker_re' is assigned to but never used
./usr/share/pyshared/Bio/SeqIO/_index.py:1011: local variable 'identifier' is assigned to but never used
./usr/share/pyshared/Bio/SeqIO/_index.py:1027: local variable 'pos' is assigned to but never used
./usr/share/pyshared/Bio/SeqIO/__init__.py:305: 'Seq' imported but unused
./usr/share/pyshared/Bio/SeqIO/__init__.py:308: 'Alignment' imported but unused
./usr/share/pyshared/Bio/SeqIO/_convert.py:224: local variable 'trunc_char' is assigned to but never used
./usr/share/pyshared/Bio/SeqIO/SffIO.py:726: local variable 'read_flow_size' is assigned to but never used
./usr/share/pyshared/Bio/SeqIO/SffIO.py:1065: redefinition of unused 'BytesIO' from line 1063
./usr/share/pyshared/Bio/SeqIO/UniprotIO.py:27: redefinition of unused 'StringIO' from line 25
./usr/share/pyshared/Bio/SeqIO/UniprotIO.py:28: 'warnings' imported but unused
./usr/share/pyshared/Bio/SeqIO/UniprotIO.py:34: redefinition of unused 'ElementTree' from line 32
./usr/share/pyshared/Bio/SeqIO/UniprotIO.py:37: redefinition of unused 'ElementTree' from line 34
./usr/share/pyshared/Bio/SeqIO/UniprotIO.py:41: redefinition of unused 'ElementTree' from line 37
./usr/share/pyshared/Bio/SeqIO/UniprotIO.py:44: redefinition of unused 'ElementTree' from line 41
./usr/share/pyshared/Bio/SeqIO/UniprotIO.py:47: redefinition of unused 'ElementTree' from line 44
./usr/share/pyshared/Bio/SeqIO/UniprotIO.py:49: redefinition of unused 'ElementTree' from line 47
./usr/share/pyshared/Bio/SeqIO/UniprotIO.py:412: local variable 'err' is assigned to but never used
./usr/share/pyshared/Bio/Statistics/lowess.py:31: redefinition of unused 'median' from line 26
./usr/share/pyshared/Bio/SeqUtils/__init__.py:121: 'log' imported but unused
./usr/share/pyshared/Bio/SeqUtils/__init__.py:204: local variable 'l' is assigned to but never used
./usr/share/pyshared/Bio/SeqUtils/__init__.py:372: local variable 'entries' is assigned to but never used
./usr/share/pyshared/Bio/SeqUtils/CheckSum.py:117: 'os' imported but unused

---