WNPP bugs submitted by moeller@debian.org
- #1001436: ITP: r-bioc-txdb.hsapiens.ucsc.hg19.knowngene -- Annotation package for TxDb object(s) (1367 day(s) old)
- #1004908: ITP: faber -- software build system (1311 day(s) old)
- #1008217: ITP: r-cran-flexclust -- Flexible Cluster Algorithms (1262 day(s) old)
- #1008218: ITP: r-bioc-spem -- S-system parameter estimation method (1262 day(s) old)
- #1008221: ITP: r-bioc-tmixclust -- mixed-effects gene-expression time-series analysis (1262 day(s) old)
- #1008250: ITP: r-bioc-widgettools -- Creates an interactive tcltk widget (1262 day(s) old)
- #1008251: ITP: r-bioc-dyndoc -- Dynamic document tools (1262 day(s) old)
- #1008255: ITP: r-bioc-tkwidgets -- R based tk widgets (1261 day(s) old)
- #1008256: ITP: r-bioc-mfuzz -- Soft clustering of time series gene expression data (1261 day(s) old)
- #1008565: ITP: r-bioc-kegg.db -- A set of annotation maps for KEGG (1258 day(s) old)
- #1008568: ITP: r-bioc-annotationforge -- Tools for building SQLite-based annotation data packages (1258 day(s) old)
- #1025167: ITP: python-oyaml -- YAML parser but with preserved dict ordering (1011 day(s) old)
- #1027457: ITP: mesact -- Mesa Configuration Tools for LinuxCNC (980 day(s) old)
- #1099857: ITP: qtpyvcp -- Framework for LinuxCNC virtual control panels (182 day(s) old)
- #1109350: ITP: boltz -- family of models for biomolecular interaction prediction (53 day(s) old)
- #1109466: ITP: python-modelcif -- handles mmCIF and BinaryCIF files with ModelCIF extension (50 day(s) old)
- #1110185: ITP: pvactools -- cancer immunotherapy suite (37 day(s) old)
- #1110199: ITP: vaxrank -- Selection of mutated protein fragments for therapeutic personalized cancer vaccines. (37 day(s) old)
- #1110200: ITP: python-pyensembl -- interface to genome database (37 day(s) old)
- #1110201: ITP: python-varcode -- DNA sequence variation effect predictor (37 day(s) old)
- #1110208: ITP: python-sercol -- Helpers for openvax immunoinformatics pipeline (37 day(s) old)
- #1110232: ITP: python-isovar -- determines mutant protein subsequences around mutations from cancer RNAseq data (36 day(s) old)
- #1110333: ITP: python-s3-transformer-pytorch -- Implements of S3-Transformers with PyTorch (34 day(s) old)
- #1110337: ITP: rfdiffusion -- protein structure generation with or without conditional information (34 day(s) old)
- #1110549: ITP: python-pyjaspar -- interface to JASPAR transcription factor motifs (29 day(s) old)
- #1110641: ITP: python-e3nn -- provides 3D Euclidian Neural Networks (28 day(s) old)
- #1110881: ITP: python-opt-einsum-fx -- optimizing einsums and associated functions with PyTorch (26 day(s) old)
- #1111537: ITP: r-cran-arrow -- cross-language development platform for in-memory data (19 day(s) old)
- #1111853: ITP: python-einx -- Universal Tensor Operations in Einstein-Inspired Notation (15 day(s) old)
- #897441: ITP: amos -- modular whole genome assembler (2684 day(s) old)
- #898695: ITP: bmx6 -- Mesh Network Routing (2672 day(s) old)
- #902940: ITP: omegamap -- describing selection and recombination in sequences (2622 day(s) old)
- #908233: ITP: mview -- biological sequence alignment conversion (2556 day(s) old)
- #911721: ITP: gramalign -- alignment of multiple biological sequences (2510 day(s) old)
- #921182: ITP: braker -- guides from NGS to whole genome annotation (2408 day(s) old)
- #928239: ITP: r-cran-openimager -- read, analyse, modify, write images with R (2321 day(s) old)
- #928690: ITP: libsmithlab -- low-level code collection for computational biology (2313 day(s) old)
- #930452: ITP: openboardview -- viewer of schematics for electronic boards (2278 day(s) old)
- #931174: ITP: libjs-scribl -- HTML5 canvas genomics graphic library (2263 day(s) old)
- #931841: ITP: python-dateutils -- complex operations on dates/times (2250 day(s) old)
- #934136: ITP: r-bioc-bridgedbr -- identifier mapping between biological databases (2222 day(s) old)
- #935163: ITP: r-cran-drinsight -- drug repurposing on transcriptome sequencing data (2210 day(s) old)
- #940481: ITP: r-other-rlc -- Use linked-charts from R (2183 day(s) old)
- #944312: ITP: libfast-perl -- FAST Analysis of Sequences Toolbox (2130 day(s) old)
- #948972: ITP: r-bioc-org.ce.eg.db -- Genome wide annotation for Worm (2061 day(s) old)
- #948973: ITP: r-bioc-org.mm.eg.db -- genome wide annotation for Mouse (2061 day(s) old)
- #962438: ITP: pore-c -- processing data from an ONT poreC run (1917 day(s) old)
- #963618: ITP: quast -- Quality Assessment Tool for Genome Assemblies (1900 day(s) old)
- #963803: ITP: nf-core-artic -- nf-core ARTIC field bioinformatics RNA-seq pipeline (1897 day(s) old)
- #964191: ITP: rosa -- Removal of Spurious Antisense in biological RNA sequences (1891 day(s) old)
- #964345: ITP: nanoplot -- plotting scripts for long read sequencing data (1889 day(s) old)
- #969509: ITP: nanocomp -- compare multiple runs of long biological sequences (1829 day(s) old)
- #970192: ITP: clark -- accurate and versatile classification of biological sequences (1820 day(s) old)
- #970255: ITP: r-cran-immunarch -- Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires (1819 day(s) old)
- #970416: ITP: pbmm2 -- minimap2 SMRT wrapper for PacBio data (1817 day(s) old)
- #970572: ITP: preseq -- determine redundancy in RNAseq experiments (1814 day(s) old)
- #970887: ITP: scanpy -- Single-Cell Analysis in Python (1808 day(s) old)
- #975071: ITP: scnapbar -- single-cell sequencing with the Nanopore (1753 day(s) old)
- #990851: ITP: nano-snakemake -- detection of structural variants in genome sequencing data (1521 day(s) old)
- #990856: ITP: tandem-genotypes -- compare lengths of duplications in DNA sequences (1520 day(s) old)
- #990958: ITP: npinv -- finds inversions in long DNA segments post alignment (1518 day(s) old)
- #991557: ITP: broad-catch -- design sets of primers to identify genomes (1502 day(s) old)
- #991786: ITP: python-billard -- fork of the Python 2.7 multiprocessing package (1497 day(s) old)
- #991805: ITP: dask-jobqueue -- deploy Dask on Job Qeueing systems (1497 day(s) old)
- #991814: ITP: ragtag -- library for scaffolding and improving modern genome assemblies (1496 day(s) old)
- #991862: ITP: shark -- Mapping-free filtering of useless RNA-Seq reads (1495 day(s) old)
- #991983: ITP: q2-gneiss -- QIIME2 plugin for Compositional Data Analysis and Visualization (1491 day(s) old)
- #991992: ITP: q2-diversity -- QIIME2 plugin for core diversity analysis (1491 day(s) old)
- #992005: ITP: q2-composition -- QIIME2 plugin for Compositional statistics (1490 day(s) old)
- #992007: ITP: q2-longitudinal -- QIIME2 plugin for longitudinal studies and paired comparisons (1490 day(s) old)
- #992494: ITP: pytest-ordering -- order execution of build-tests with pytest (1480 day(s) old)
- #992713: ITP: r-cran-rcppnumerical -- 'Rcpp' Integration for Numerical Computing Libraries (1476 day(s) old)
- #992720: ITP: r-bioc-apeglm -- Approximate posterior estimation for GLM coefficients (1476 day(s) old)
- #993226: ITP: r-other-virfinder -- identifying viral sequences from metagenomic data (1470 day(s) old)
- #993267: ITP: virsorter2 -- classifier to detect DNA and RNA virus genomes (1469 day(s) old)
- #993268: ITP: mashmap -- mapping whole genomes or long reads (PacBio/ONT) to reference (1469 day(s) old)
- #993273: ITP: virify -- finds viruses in metagenomic and metatranscriptomic data (1469 day(s) old)
- #993305: ITP: r-cran-gggenes -- Draw Gene Arrow Maps in 'ggplot2' (1468 day(s) old)
- #993306: ITP: r-cran-ggfittext -- Fit Text Inside a Box in 'ggplot2' (1468 day(s) old)
- #993321: ITP: seqwish -- alignment to variation graph inducer (1468 day(s) old)
- #993977: ITP: r-bioc-dorothea -- Collection Of Human And Mouse TF Regulons (1459 day(s) old)
- #994004: ITP: r-bioc-bcellviper -- Human B-cell transcriptional interactome and expression data (1458 day(s) old)
- #995422: ITP: long-read-assembler -- assembly from long reads against reference genome (1437 day(s) old)
- #995901: ITP: r-cran-cvxr -- Disciplined Convex Optimization (1430 day(s) old)
- #995938: ITP: r-cran-scs -- Splitting Conic Solver (1429 day(s) old)
- #995943: ITP: r-cran-osqp -- Quadratic Programming Solver using the 'OSQP' Library (1429 day(s) old)
- #996582: ITP: r-cran-coloc -- Colocalisation Tests of Two Genetic Traits (1422 day(s) old)
- #998044: ITP: python-pyreadr -- read/write R data files via Python pandas (1409 day(s) old)
WNPP bugs owned by moeller@debian.org
- #1001436: ITP: r-bioc-txdb.hsapiens.ucsc.hg19.knowngene -- Annotation package for TxDb object(s) (1367 day(s) old)
- #1004908: ITP: faber -- software build system (1311 day(s) old)
- #1008217: ITP: r-cran-flexclust -- Flexible Cluster Algorithms (1262 day(s) old)
- #1008218: ITP: r-bioc-spem -- S-system parameter estimation method (1262 day(s) old)
- #1008221: ITP: r-bioc-tmixclust -- mixed-effects gene-expression time-series analysis (1262 day(s) old)
- #1008250: ITP: r-bioc-widgettools -- Creates an interactive tcltk widget (1262 day(s) old)
- #1008251: ITP: r-bioc-dyndoc -- Dynamic document tools (1262 day(s) old)
- #1008255: ITP: r-bioc-tkwidgets -- R based tk widgets (1261 day(s) old)
- #1008256: ITP: r-bioc-mfuzz -- Soft clustering of time series gene expression data (1261 day(s) old)
- #1008565: ITP: r-bioc-kegg.db -- A set of annotation maps for KEGG (1258 day(s) old)
- #1008568: ITP: r-bioc-annotationforge -- Tools for building SQLite-based annotation data packages (1258 day(s) old)
- #1025167: ITP: python-oyaml -- YAML parser but with preserved dict ordering (1011 day(s) old)
- #1027457: ITP: mesact -- Mesa Configuration Tools for LinuxCNC (980 day(s) old)
- #1099857: ITP: qtpyvcp -- Framework for LinuxCNC virtual control panels (182 day(s) old)
- #1109350: ITP: boltz -- family of models for biomolecular interaction prediction (53 day(s) old)
- #1109466: ITP: python-modelcif -- handles mmCIF and BinaryCIF files with ModelCIF extension (50 day(s) old)
- #1110185: ITP: pvactools -- cancer immunotherapy suite (37 day(s) old)
- #1110199: ITP: vaxrank -- Selection of mutated protein fragments for therapeutic personalized cancer vaccines. (37 day(s) old)
- #1110200: ITP: python-pyensembl -- interface to genome database (37 day(s) old)
- #1110201: ITP: python-varcode -- DNA sequence variation effect predictor (37 day(s) old)
- #1110208: ITP: python-sercol -- Helpers for openvax immunoinformatics pipeline (37 day(s) old)
- #1110232: ITP: python-isovar -- determines mutant protein subsequences around mutations from cancer RNAseq data (36 day(s) old)
- #1110333: ITP: python-s3-transformer-pytorch -- Implements of S3-Transformers with PyTorch (34 day(s) old)
- #1110337: ITP: rfdiffusion -- protein structure generation with or without conditional information (34 day(s) old)
- #1110549: ITP: python-pyjaspar -- interface to JASPAR transcription factor motifs (29 day(s) old)
- #1110641: ITP: python-e3nn -- provides 3D Euclidian Neural Networks (28 day(s) old)
- #1110881: ITP: python-opt-einsum-fx -- optimizing einsums and associated functions with PyTorch (26 day(s) old)
- #1111537: ITP: r-cran-arrow -- cross-language development platform for in-memory data (19 day(s) old)
- #1111853: ITP: python-einx -- Universal Tensor Operations in Einstein-Inspired Notation (15 day(s) old)
- #897441: ITP: amos -- modular whole genome assembler (2684 day(s) old)
- #898695: ITP: bmx6 -- Mesh Network Routing (2672 day(s) old)
- #902940: ITP: omegamap -- describing selection and recombination in sequences (2622 day(s) old)
- #908233: ITP: mview -- biological sequence alignment conversion (2556 day(s) old)
- #911721: ITP: gramalign -- alignment of multiple biological sequences (2510 day(s) old)
- #921182: ITP: braker -- guides from NGS to whole genome annotation (2408 day(s) old)
- #928239: ITP: r-cran-openimager -- read, analyse, modify, write images with R (2321 day(s) old)
- #928690: ITP: libsmithlab -- low-level code collection for computational biology (2313 day(s) old)
- #930452: ITP: openboardview -- viewer of schematics for electronic boards (2278 day(s) old)
- #931174: ITP: libjs-scribl -- HTML5 canvas genomics graphic library (2263 day(s) old)
- #931841: ITP: python-dateutils -- complex operations on dates/times (2250 day(s) old)
- #934136: ITP: r-bioc-bridgedbr -- identifier mapping between biological databases (2222 day(s) old)
- #935163: ITP: r-cran-drinsight -- drug repurposing on transcriptome sequencing data (2210 day(s) old)
- #940481: ITP: r-other-rlc -- Use linked-charts from R (2183 day(s) old)
- #944312: ITP: libfast-perl -- FAST Analysis of Sequences Toolbox (2130 day(s) old)
- #948972: ITP: r-bioc-org.ce.eg.db -- Genome wide annotation for Worm (2061 day(s) old)
- #948973: ITP: r-bioc-org.mm.eg.db -- genome wide annotation for Mouse (2061 day(s) old)
- #962438: ITP: pore-c -- processing data from an ONT poreC run (1917 day(s) old)
- #963618: ITP: quast -- Quality Assessment Tool for Genome Assemblies (1900 day(s) old)
- #963803: ITP: nf-core-artic -- nf-core ARTIC field bioinformatics RNA-seq pipeline (1897 day(s) old)
- #964191: ITP: rosa -- Removal of Spurious Antisense in biological RNA sequences (1891 day(s) old)
- #964345: ITP: nanoplot -- plotting scripts for long read sequencing data (1889 day(s) old)
- #969509: ITP: nanocomp -- compare multiple runs of long biological sequences (1829 day(s) old)
- #970192: ITP: clark -- accurate and versatile classification of biological sequences (1820 day(s) old)
- #970255: ITP: r-cran-immunarch -- Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires (1819 day(s) old)
- #970416: ITP: pbmm2 -- minimap2 SMRT wrapper for PacBio data (1817 day(s) old)
- #970572: ITP: preseq -- determine redundancy in RNAseq experiments (1814 day(s) old)
- #970887: ITP: scanpy -- Single-Cell Analysis in Python (1808 day(s) old)
- #975071: ITP: scnapbar -- single-cell sequencing with the Nanopore (1753 day(s) old)
- #989465: ITP: pythondata-software-compiler-rt -- extends compiler_rt for Python usage (1555 day(s) old)
- #989535: ITP: cmdock -- fit chemical compounds to proteins and nucleotides (1553 day(s) old)
- #990851: ITP: nano-snakemake -- detection of structural variants in genome sequencing data (1521 day(s) old)
- #990856: ITP: tandem-genotypes -- compare lengths of duplications in DNA sequences (1520 day(s) old)
- #990958: ITP: npinv -- finds inversions in long DNA segments post alignment (1518 day(s) old)
- #991557: ITP: broad-catch -- design sets of primers to identify genomes (1502 day(s) old)
- #991786: ITP: python-billard -- fork of the Python 2.7 multiprocessing package (1497 day(s) old)
- #991805: ITP: dask-jobqueue -- deploy Dask on Job Qeueing systems (1497 day(s) old)
- #991814: ITP: ragtag -- library for scaffolding and improving modern genome assemblies (1496 day(s) old)
- #991862: ITP: shark -- Mapping-free filtering of useless RNA-Seq reads (1495 day(s) old)
- #991983: ITP: q2-gneiss -- QIIME2 plugin for Compositional Data Analysis and Visualization (1491 day(s) old)
- #991992: ITP: q2-diversity -- QIIME2 plugin for core diversity analysis (1491 day(s) old)
- #992005: ITP: q2-composition -- QIIME2 plugin for Compositional statistics (1490 day(s) old)
- #992007: ITP: q2-longitudinal -- QIIME2 plugin for longitudinal studies and paired comparisons (1490 day(s) old)
- #992494: ITP: pytest-ordering -- order execution of build-tests with pytest (1480 day(s) old)
- #992713: ITP: r-cran-rcppnumerical -- 'Rcpp' Integration for Numerical Computing Libraries (1476 day(s) old)
- #992720: ITP: r-bioc-apeglm -- Approximate posterior estimation for GLM coefficients (1476 day(s) old)
- #993226: ITP: r-other-virfinder -- identifying viral sequences from metagenomic data (1470 day(s) old)
- #993267: ITP: virsorter2 -- classifier to detect DNA and RNA virus genomes (1469 day(s) old)
- #993268: ITP: mashmap -- mapping whole genomes or long reads (PacBio/ONT) to reference (1469 day(s) old)
- #993273: ITP: virify -- finds viruses in metagenomic and metatranscriptomic data (1469 day(s) old)
- #993305: ITP: r-cran-gggenes -- Draw Gene Arrow Maps in 'ggplot2' (1468 day(s) old)
- #993306: ITP: r-cran-ggfittext -- Fit Text Inside a Box in 'ggplot2' (1468 day(s) old)
- #993321: ITP: seqwish -- alignment to variation graph inducer (1468 day(s) old)
- #993977: ITP: r-bioc-dorothea -- Collection Of Human And Mouse TF Regulons (1459 day(s) old)
- #994004: ITP: r-bioc-bcellviper -- Human B-cell transcriptional interactome and expression data (1458 day(s) old)
- #995422: ITP: long-read-assembler -- assembly from long reads against reference genome (1437 day(s) old)
- #995901: ITP: r-cran-cvxr -- Disciplined Convex Optimization (1430 day(s) old)
- #995938: ITP: r-cran-scs -- Splitting Conic Solver (1429 day(s) old)
- #995943: ITP: r-cran-osqp -- Quadratic Programming Solver using the 'OSQP' Library (1429 day(s) old)
- #996582: ITP: r-cran-coloc -- Colocalisation Tests of Two Genetic Traits (1422 day(s) old)
- #998044: ITP: python-pyreadr -- read/write R data files via Python pandas (1409 day(s) old)