bart (0.6.00-3) [PTS] [DDPO]

NEW: VCS has unreleased changes: 0.7.00-1 > 0.6.00-3

Git: https://salsa.debian.org/med-team/bart.git
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Branch: master
Path: debian/changelog
Browser: https://salsa.debian.org/med-team/bart
Last scan: 2021-10-25 21:36:56+00
Next scan: 2021-11-02 05:21:00+00
CI pipeline status: failed

Debian changelog in Git:

bart (0.7.00-1) UNRELEASED; urgency=medium

  * New upstream version.
  * Patch to change library path for cuda.
  * Update upstream metadata.

 -- Martin Uecker <martin.uecker@med.uni-goettingen.de>  Thu, 26 Aug 2021 15:05:30 +0200

This branch is 57 commits ahead of tag debian/0.6.00-3

Git log:

commit 0f940882c065001dce19fb57ec00f2dc7ae6d85b
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Oct 25 19:01:31 2021 +0200

    patch to relax failing test

commit 79a4ca89aab524758940c70bfa71d070013c5ee2
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Sep 13 18:40:25 2021 +0200

    Update patches

commit 5bdd1948b5148fce08fed60c57283464bbefee0c
Merge: 723bf45 d1b0e57
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Sep 13 18:38:01 2021 +0200

    Merge tag 'v0.7.00'
    
    version 0.7.00
    
    Changes:
            - new tools: signal mobafit roistat pol2mask conway
            - signal: tool to simulate MRI signals
            - mobafit: tool for point-wise fitting
            - roistat: tool to compute ROI statistics
            - pol2mask: tool to compute masks from polygons
            - conway: Conway's game of life
            - moba: model-based recon for multi-echo FLASH
            - moba: model-based T2 mapping
            - moba: make coil smoothness configurable
            - moba: add option for k-space filter
            - moba: enable cartesian k-space data in moba
            - wshfl: Add fista option
            - estdelay: export to file
            - traj: multi-echo trajectory
            - traj: reading of gradient delays from file
            - phantom: random tube phantom
            - nlinv: non squared image sizes
            - generic: additional tests and unit tests
            - generic: continuous integration for gitlab
            - generic: support for BART_COMPAT_VERSION
            - generic: warning for dirty git versions
            - generic: target for libismrm.a if ISMRMRD enabled
            - generic: support for IBM POWER9 HPC ppc64le
            - generic: MATLAB/Octave test
            - library: add support for long options
            - library: new functions: md_zslessequal
            - library: linop_reshape_in, linop_reshape_out
            - library: generalized linop_sum
            - library: operator_stack along an arbitrary dimension
            - library: new zsmax prox operator
            - library: continuation for lsqr/itop
            - library: warmstart for lsqr
            - library: BLAS accelerated strided operations
            - library: add more geometry functions
            - library: more operator_p helper functions
            - many other bug fixes and improvements

commit 723bf45e61ec3726ff23c070edc12ef7dc8e7ccf
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Aug 29 09:15:34 2021 +0200

    update patches

commit 0b4297e0497ef7d0346747b223be72251afc407c
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Aug 26 15:09:07 2021 +0200

    update changelog

commit e666efa19ecc3dafa57c045d66102084f53a103f
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Aug 26 15:05:00 2021 +0200

    update copyright

commit d1b0e576c3f759089915565d5bf57832acf7b03e
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Mar 1 15:17:01 2021 +0100

    bump version

commit 85961069461bc254aef881a15e8f90ebd9523d6c
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Feb 26 20:00:54 2021 +0100

    correct typo

commit e4cb8183e42d878d62e49978339863121fe4d7e6
Author: Andreas Tille <tille@debian.org>
Date:   Wed Feb 24 08:34:41 2021 +0100

    DOI is only allowed inside Reference

commit 266b3d206df202d4cd130ec40049e79684754c88
Author: Andreas Tille <tille@debian.org>
Date:   Sun Feb 21 12:23:52 2021 +0100

    Do not repeat Homepage in upstream/metadata.  It can be found in debian/control

commit 45dde727277eb9ab5b186021a53ad852d5f8f09c
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Feb 21 08:53:09 2021 +0100

    Set upstream metadata fields: Homepage, Contact, Funding, Cite-As

commit e1991487de3826b96e4cfebb65fbf7902ac62a6d
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Tue Feb 2 13:42:58 2021 +0100

    signal: add option for off resonance

commit 49d447da2d55bebdb193555809318bb2bf943a7f
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Mon Feb 8 14:55:25 2021 +0100

    enable switch to another fat spectrum
    
    - moba uses '--fat_spec_0' as the switch
    - default spectrum is FAT_SPEC_1

commit 762da30b5aea196800dae97276e68f194ff3db6c
Author: Xiaoqing Wang <xiaoqing.wang@med.uni-goettingen.de>
Date:   Sat Dec 26 20:37:25 2020 +0100

    use the signal tool to simulate the IR Look-Locker FLASH Dictionary

commit d35ca140a4034c85e89e05a4557cb070d3a011b1
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Feb 12 11:17:57 2021 +0100

    add command-line option for alpha_min0

commit 6b23e1764474746280994c057a31028bd72fac69
Author: Christian Holme <christian.holme@med.uni-goettingen.de>
Date:   Fri Feb 5 16:27:05 2021 +0100

    misc/opts: add missing OPTL_CLEAR

commit 5873cb0b09858b22d07da053a4190298df7df9c1
Author: Christian Holme <christian.holme@med.uni-goettingen.de>
Date:   Wed Feb 3 14:40:57 2021 +0100

    moba: make coil smoothness configurable

commit 535bba9b72a9a5f897eef2f26897df865460c89e
Author: Siddharth Srinivasan <sidward@users.noreply.github.com>
Date:   Fri Feb 12 02:02:28 2021 -0800

    wshfl: Add fista option (#245)

commit 7d90203b62746ec01a8c2658acd64f2c1e82087f
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Feb 12 10:59:36 2021 +0100

    rename HPC to SCALAPACK

commit bb6703b5746e867f7897dabde19465a2dde5bc10
Author: Monius <m1105930979@gmail.com>
Date:   Tue Jan 12 02:14:30 2021 +0800

    add support for IBM POWER9 HPC ppc64le

commit cf15be80cdc3346f2519c0bbdfeb771d400d2e39
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Feb 12 09:14:54 2021 +0100

    extend ci

commit 0676133696ed32ec59b2fdfce80b58f03eca6155
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Feb 11 21:02:51 2021 +0100

    clang fixes

commit b4f8b67eb271916affc9afdbfb94dd15743090bd
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Feb 11 19:33:26 2021 +0100

    change cuda default path

commit a139b2c0ab22c92f4ea13fbd459fecc0e593ab8e
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Feb 7 22:26:26 2021 +0100

    add warning for dirty git versions

commit 3385907aab71571d1ecf80e854d22e32b676e394
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Feb 7 22:15:14 2021 +0100

    coding style

commit 609df9a0ecccbcc17887920d7eb8a92a92f36e52
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Feb 3 20:55:41 2021 +0100

    test linearity of adjoint nufft

commit 630932973812ea5681d7e87460de6834df1d70ec
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Tue Feb 2 21:57:37 2021 +0100

    rewrite hard and binary thresholding to use absolute value

commit 7a292fd89b343a5d982632fb8fc008618a3c2380
Author: Nick Scholand <nick.scholand@med.uni-goettingen.de>
Date:   Mon Aug 5 11:05:22 2019 +0200

    QuantMap::Add binary thresholding for mask creation.

commit c37a8551f58270ea06be0b690732232825b6cc1a
Author: Yaël Balbastre <yael.balbastre@gmail.com>
Date:   Sun Jan 31 08:13:45 2021 +0000

    Fix: add target for libismrm.a if ISMRMRD enabled (#244)

commit 336a48bfb37f59a2907a606fcf1536f3d635f4b7
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Jan 28 23:46:55 2021 +0100

    coding style

commit f931b97afd0090a92aadda55f6b6f44b334de08a
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Jan 28 23:40:46 2021 +0100

    add alpha_min0 option for iter4_irgnm2

commit 105f41e98e13f29213448097fe7cb5fe078c7caa
Author: Siddharth Srinivasan <sidward@users.noreply.github.com>
Date:   Thu Jan 28 03:26:32 2021 -0500

    Bug fix for cartesian moba (#243)

commit c2069733a8100307d4cb48c7be396877ac34b024
Author: Christian Holme <christian.holme@med.uni-goettingen.de>
Date:   Sat Jan 16 17:12:48 2021 +0100

    fix  use_compat_to_version()

commit cba53c81b6c75616b30c2e340b4dff8f18976436
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Jan 10 16:10:16 2021 +0100

    Conway's game of life

commit 44e18d668bc2ca6717776032b98c0355d2316ad7
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Tue Dec 29 13:31:21 2020 +0100

    update FFT-based convolutions

commit 1bd4ea422e0491e8f0441e0b6e4787c050dd29dc
Author: Christian Holme <christian.holme@med.uni-goettingen.de>
Date:   Fri Jan 8 13:24:32 2021 +0100

    add support for BART_COMPAT_VERSION
    
    This allows the use of an environment variable to control
    compatibility behavior of BART to old versions (using e.g
    BART_COMPAT_VERSION="v0.5.00").
    
    So far, this has only an effect on the golden angle calculation
    in the trajectory.

commit a28c18aa6f2c21906144522a79f5227567c22e28
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Jan 4 15:00:12 2021 +0100

    do not use memopt init for GPUs

commit b1ae4161558565c5978c38ba91fe40bd35f26a07
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Jan 4 08:51:33 2021 +0100

    missing test dependencies

commit 9dde2ad43921951d1b45cd1a525b78935c7f0547
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Jan 3 23:04:36 2021 +0100

    add option for k-space filter

commit 21775d2d696a4cac01baf476c713b2eeea8dd640
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Wed Dec 2 09:34:49 2020 +0100

    lib order

commit 572bfe94ca13791215cbb26e03ff38e8b0708c69
Author: Xiaoqing Wang <xiaoqing.wang@med.uni-goettingen.de>
Date:   Thu Dec 31 17:21:15 2020 +0100

    simplify T1fun and T2fun in moba

commit ce40bb7403098fba677de1603356744aaa191a4a
Author: Xiaoqing Wang <xiaoqing.wang@med.uni-goettingen.de>
Date:   Wed Dec 30 15:58:32 2020 +0100

    unify psf gridding in moba

commit 7f25fa0011991a5163ed6b87612c99777c9c6fd8
Author: Xiaoqing Wang <xiaoqing.wang@med.uni-goettingen.de>
Date:   Tue Dec 29 22:45:19 2020 +0100

    fix a memory leak in moba

commit b889d1b71e08f4f7dc6142d70b837288b07de49c
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Wed Dec 30 13:11:38 2020 +0100

    update test cases

commit 624cd3af7a7e5bde0829f8197b470d8c15e79005
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Wed Dec 30 13:10:39 2020 +0100

    simulate fat component

commit 4f8f4b20d1b4c8e528b4a77f511b1380996c7748
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Wed Dec 30 12:28:34 2020 +0100

    fix and rename

commit b9c642ece1b7b3c252120f4a0ee608ca967ee3c5
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Wed Dec 9 10:16:53 2020 +0100

    update fat 1H MR spectrum

commit 950b3a5de5742b12e297a37175f84f69b1a578f4
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Dec 25 09:25:28 2020 +0100

    add stat tools

commit 7456b1c6b7ddc696130ec98b84246c74be4f7166
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 23 23:11:26 2020 +0100

    tighten test

commit b95a6cf0a2340d782ef4ca2f38b1b79b6f3cf03e
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 23 23:06:57 2020 +0100

    rename pixelfit -> mobafit

commit 610809dfdf3afd91a4b6bfe344f325df9c9f7d78
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 23 23:01:09 2020 +0100

    pixelfit updates

commit 14fb3a0581e5602f16b81f484bfe25b6131df459
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Tue Nov 10 20:11:59 2020 +0100

    relax test

commit e888d51a67eb43678915ad08de2526c692489594
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Thu Dec 3 22:53:11 2020 +0100

    add pixelfit

commit 158938107bc27012d2523099a817bc48ab55c18b
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Tue Dec 29 18:18:51 2020 +0100

    add missing md_zslessequal

commit bb7d99dd14e7268894ce4ba9b9d54c6b3680ab62
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Tue Dec 29 11:32:23 2020 +0100

    coding style

commit 0aa9ea53ef347eda0e8f9dccdc0d25a09fd41638
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Tue Dec 29 11:20:27 2020 +0100

    redefine SWAP macro

commit cf3e33fb5fae5d610a4d3c3e90d091d3f728f107
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sat Dec 19 10:12:12 2020 +0100

    remove /lib64 suffix for cuda library paths