bart (0.9.00-3) [PTS] [DDPO]

NEW: VCS has unreleased changes: 1.0.00-1 > 0.9.00-3

Git: https://salsa.debian.org/med-team/bart.git
JSON
Enter a full Vcs-* header, supported schemes are: Vcs-Bzr, Vcs-Cvs, Vcs-Darcs, Vcs-Git, Vcs-Hg, Vcs-Mtn, Vcs-Svn.
For Vcs-Git append -b branch to select the branch name; append [subdir] if the debian/ directory is not in the repository root.
The next upload will reset the information from the source package headers.
Branch: master
Path: debian/changelog
Repo size: 1970176
Browser: https://salsa.debian.org/med-team/bart
Last scan: 2026-05-15 23:36:01+00
Next scan: 2026-05-23 17:53:00+00
CI pipeline status: failed

Debian changelog in Git:

bart (1.0.00-1) UNRELEASED; urgency=medium

  * New upstream version.
  * Update links to upstream.
  * Update debian copyright.

 -- Martin Uecker <uecker@tugraz.at>  Wed, 18 Feb 2026 21:48:55 +0100

This branch is 67 commits ahead of tag debian/0.9.00-3

Git log:

commit e280bfce4d1436d7d5fa281de2c952450d8dc74e
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun May 10 21:44:30 2026 +0200

    turn off parallel builds

commit 7258a093c3fb06ddccd433916ce88e5be1edf42b
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun May 10 16:41:34 2026 +0200

    turn i386 tests off for now

commit 9a8bfb0544625006431df5c460106d342abfac02
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun May 10 08:44:23 2026 +0200

    deterministic archives

commit 8f4019e1bf0215670a9b29f801817deafe1f76ea
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat May 9 23:15:18 2026 +0200

    do not delete command.txt

commit 515390e9ffc8e1612460aa27f9504370b60dbaee
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat May 9 21:42:47 2026 +0200

    fix debian tests

commit 410d40b6d6882bbdac34d410f5c25b3108be677c
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat May 9 21:14:05 2026 +0200

    add fix required for Debian autopkgtest tests

commit 51f3244fd862ba33b6a1134fef51b3e5548f395a
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat May 9 15:27:06 2026 +0200

    remove feature for local use

commit 30a35d97236819337f9d6ca28d2fe028e66c1f34
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat May 9 15:01:08 2026 +0200

    turn off all workarounds for now

commit 646ffecdea8e14cdac1c419c232392af8e2ed362
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat May 9 14:53:27 2026 +0200

    add patch to remove duplicate entries for commands

commit 76e0ba732a2aa5902513ae80bc055002ea7e4166
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat May 9 14:37:09 2026 +0200

    add rpath patch

commit b6839744f33e3219a2eadc2c9d67c6d1fde6c34a
Author: Martin Uecker <uecker@tugraz.at>
Date:   Tue Mar 31 16:31:59 2026 +0200

    fix commands test

commit 03c3ed65bcfe204da65c73c10d4bab1652d2acca
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat Mar 28 18:34:49 2026 +0100

    add missing dllspec.h

commit 91eceb4e891d896bdeafc76fef333e00cd898f87
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat Mar 28 17:48:26 2026 +0100

    update copyright

commit 56c8f26af9dc21082e4e52d2af23c4ee117baf1d
Author: Martin Uecker <uecker@tugraz.at>
Date:   Wed Feb 18 22:22:18 2026 +0100

    homepage in control

commit 8fda7c0738de0f8009abd937c92db3ff70de9d14
Author: Martin Uecker <uecker@tugraz.at>
Date:   Wed Feb 18 21:49:55 2026 +0100

    update changelog

commit 564aaaae61b11bfad0b46ef4eac2b28faccc839a
Author: Martin Uecker <uecker@tugraz.at>
Date:   Wed Feb 18 18:26:34 2026 +0100

    rebase patches

commit 170350aac672b53874f517f1d1942eea8f692a4e
Merge: c596da3 37f3c5f
Author: Martin Uecker <uecker@tugraz.at>
Date:   Wed Feb 18 18:12:46 2026 +0100

    Merge tag 'v1.0.00'
    
    version 1.0.00
    
    Changes:
            - doc: Add definition files for singularity containers with BART
            - doc: Add documentation of performance options
            - doc: Add documentation for singularity container
            - doc: Add documentation for environment variables
            - affinereg (new): affine registration
            - bloch (new): Bloch simulation (work-in-progress)
            - coils (new): simulate coil sensitivity maps
            - compress (new): compress data using binary mask
            - cunet (new): conditional U-Net
            - denoise (new): denoising tool
            - estmotions (new): non-rigid registration
            - estscaling (new): estimate a scaling factor from k-space center
            - gmm (new): Gaussian-Mixture models
            - grid (new): compute Cartesian grids
            - grog (new): GROG calibration and gridding (currently only radials)
            - hist (new): compute histograms
            - interpolate (new): interpolate and image after transformation
            - mobasig (sig): forward calculation of physical signal models
            - multicfl (new): combine/split multi-cfl files
            - nlinvnet (new): NLINV-Net reconstruction and training
            - ncalib (new): sensitivity calibration using NLINV
            - phasepole (new): tool to detect phase poles
            - pulse (new): compute radio-frequency pulse shapes
            - raga (new): tool to compute RAGA indices
            - rovir (new): coil compression with region optimization
            - sample (new): sample generative score-based models
            - seq (new): compute MRI sequences
            - stl (new): read/write STL files
            - unwrap (new): simply unwrapping tool
            - tee (new): copy stdin to file and stdout
            - toraw (new): create raw data files
            - trajcor (new): retrospectively correct trajectory based on gradient delays
            - mat2cfl: removed.
            - bin: zero-fill option
            - bin: stream support
            - calc: new function: round
            - ccapply: realtime geometric coil compression
            - conway: stream support
            - copy: stream support
            - copy: support for reordering of dimensions
            - epg: make refocusing FA accessible from CLI
            - ecalib: use Nyström approximation
            - ecalib: economic mode for 3D coils
            - fovshift: pass shift as file
            - invert: option for regularization
            - join: stream support
            - mandelbrot: stream support
            - moba: IR-MECO reconstruction
            - moba: finalize transparent gpu support in moba
            - moba: change scaling and command line for T2 moba to be consistent with mobafit
            - mobafit: CEST fitting
            - mobafit: simulation based fitting (Bloch + Bloch-McConnell)
            - nnet: support for nnU-Net for segmenation
            - nlinv: basis support, temporal regularization, builtin nufft
            - nlinv: stream support
            - nufft: fix compatibility to v0.8.00
            - pics: use of prox in last iteration of FISTA
            - pics: (TE-)ASL reconstruction
            - pics: Euler-Maruyama
            - reconet: fix compatibility to v0.8.00
            - show: support for printing real part and index
            - signal: enable the input of fat fraction
            - signal: generating function-based FSE model
            - signal: buxton model
            - signal: option to toggle short TR approximation
            - sim: CEST sequence
            - traj: option to create RAGA index file
            - twixread: optional read PMU signal
            - twixread: read noise scans
            - rtreco.sh: new script for realtime reconstruction
            - library: remove divergence free wavelets
            - library (num): stable and improved random number generation with Philox-4x32
            - library (num): GPU support for gaussian random numbers
            - library (num): rename md_(de)compress -> md_mask_(de)compress
            - library (num): new functions: md_(z)round(2) functions, md_zsetnanzero(2)
            - library (num): MPI support for md_copy with strides, and md_zadd2
            - library (num): new LAPACK wrappers (svd, eigenvalues, solvers)
            - library (num): matrix logarithm of upper triangular matrix
            - library (num): matrix square root of triangular matrix
            - library (num): complex support for matrix exponentials
            - library (num): new special functions: Legendre polynomials
            - library (num): new special functions: simplified hyp2f1 function
            - library (num): new special functions: approximation of gamma function
            - library (num): Gauss-Legendre quadrature
            - library (num): Crank Nicolson
            - library (num): functions for Gaussian mixture models
            - library (ismrmd): new functions to parse ismrmrd streams
            - library (iter): Euler Mayurama
            - library (linop): shift, slice, hankelization, reshape with flags
            - library (nn): cast linop to nn
            - library (nn): support for leaky ReLU
            - library (nn): normalization layer
            - library (nn): normalized loss
            - library (nlops): checkpointing container
            - general: move to codeberg
            - general: remove TOOLBOX_PATH and DEBUG_LEVEL (use the new ones with BART_ prefix)
            - general: stream protocol implementation + tests
            - general: experimental support for delayed computation
            - general: Windows DLLs

commit 37f3c5f0feaf0a19a7fca85c926ad74101f4a034
Author: Martin Uecker <uecker@tugraz.at>
Date:   Tue Feb 17 15:30:56 2026 +0100

    bump version

commit 4f6271713faa7089e83bc570d0128398a31edfc1
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Tue Feb 17 16:39:42 2026 +0100

    update sequence docu

commit 5ac94e26ecc01ab2340c592e36d450eb7e5ba52c
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Tue Feb 17 15:30:09 2026 +0100

    remove loop dims from seq/opts
    
    improved usability in sequence

commit 6bcf5d63efc200f7e42ab68245c19d1a9e5b8992
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Thu Feb 12 19:16:21 2026 +0100

    warn on invalid sequence duration

commit 0d012015cbfa6573eee75be63b03f0de38cc9911
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Tue Feb 17 15:49:58 2026 +0100

    add noise scan to measurement time calculation

commit 17a6e3bfe37edc4c91f4428263fe62f791ff664c
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Thu Feb 12 19:06:38 2026 +0100

    fix linearize events and print total duration in seq tool

commit 9d7bdf7736eda485c2f1191dd0ed606bbe015b11
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Thu Feb 12 12:24:07 2026 +0100

    consistent multi-echo trajectories

commit 99ab80da4574c9c890ba7e3fb86fe62d91d3dbaf
Author: Blumenthal, Moritz <blumenthal@tugraz.at>
Date:   Sat Feb 14 10:36:55 2026 +0100

    dps sampling

commit 82a4b0761d64ac5fdaf81c92d854c6ecf2d38b08
Author: Blumenthal, Moritz <blumenthal@tugraz.at>
Date:   Sat Feb 14 15:08:30 2026 +0100

    fix compilation with "OPENBLAS=1" and don't change threads.
    
    Fix compilation when <cblas.h> is not from openblas.
    Dont change threads for openblas, as it may be relevant for lapack functions

commit a6595f7d17b7b99384a509b97e74e099b78d0864
Author: Martin Uecker <uecker@tugraz.at>
Date:   Tue Feb 17 09:22:01 2026 +0100

    document environment variables

commit ee0ea5eff15e943096d66d80723c9320f30d6374
Author: Martin Uecker <uecker@tugraz.at>
Date:   Tue Feb 17 09:06:49 2026 +0100

    remove RING_PAPER environment variable

commit 431a6f25332fccc1580236b766eb90790756feea
Author: Martin Uecker <uecker@tugraz.at>
Date:   Tue Feb 17 08:24:58 2026 +0100

    relax for mac

commit df9a1f6c4fac6564536ee0de01ca77d5d12c6729
Author: Martin Uecker <uecker@tugraz.at>
Date:   Mon Feb 16 19:34:33 2026 +0100

    add low-rank + sparse tests

commit 64378a097f6be906c2209fbd79b813137195085a
Author: Martin Uecker <uecker@tugraz.at>
Date:   Mon Feb 16 20:42:47 2026 +0100

    only remove noise level when it exists

commit 198263e6e7d9d394664ef04275919dc63c61f1a8
Author: Martin Uecker <uecker@tugraz.at>
Date:   Mon Feb 16 13:10:56 2026 +0100

    also scale result for lowrank+sparse

commit 2e78dbb06ceceba28cc2274dbf2f5cc234d6470c
Author: Martin Uecker <uecker@tugraz.at>
Date:   Mon Feb 16 12:44:33 2026 +0100

    modernize

commit a72f719057fb2db614d59e28f3cab1f2eec7d5a1
Author: Blumenthal, Moritz <blumenthal@tugraz.at>
Date:   Mon Feb 16 16:31:08 2026 +0100

    use /tmp or $TMPDIR for streamed cfl files

commit 32f44336b00d39f70c573f1fca83e5cc5f7b79c5
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Mon Feb 16 12:00:30 2026 +0100

    rename ui enums

commit 7b1413dc91c28bc61fc15132b74edfd70565bc4c
Author: Philip Schaten <philip.schaten@tugraz.at>
Date:   Fri Feb 13 12:07:35 2026 +0100

    remove constants for UI: _cil and _cid

commit f47c8b8d112f286928c66f45dffa1b7fd3a43f1f
Author: Philip Schaten <philip.schaten@tugraz.at>
Date:   Fri Feb 13 11:24:40 2026 +0100

    Add string-based custom UI interface

commit 4c0236ecdf7dfa6f47a1cf643ddba540a13e9873
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Fri Feb 13 16:26:13 2026 +0100

    remove equal dims check

commit f2d4d96a8b3cf48caff3c2a4f2d7ae4c430aa2c3
Author: Martin Uecker <uecker@tugraz.at>
Date:   Mon Feb 16 11:04:58 2026 +0100

    fix typo

commit 4360b1666742d1ae273d65d63c0b41e7061a2a02
Author: Martin Uecker <uecker@tugraz.at>
Date:   Mon Feb 16 11:04:53 2026 +0100

    fix test dependencies

commit de933a34026136d5abd4e335c761c727502cd576
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun Feb 15 20:47:16 2026 +0100

    don't have empty error

commit da8fa6cba955b9476466f45fa9bc73c6a8a2864f
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun Feb 15 20:49:29 2026 +0100

    fix checks for stream flags

commit 9b6a032e840272a3393d431089c1cd1c32035467
Author: Christian Bardey <hcmb@mailbox.org>
Date:   Sun Feb 15 21:15:21 2026 +0100

    stl/misc.c: rewind file descriptor for MacOS
    
    Seems like it needs it

commit 1522f697d7f65c4a604e63b181414ad84e6ae7dd
Author: Christian Bardey <hcmb@mailbox.org>
Date:   Sun Feb 15 21:14:57 2026 +0100

    stl/misc.c: error messages should end in newline

commit 03e70639d5ff59c02c096811bc600889bab348f9
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun Feb 15 14:43:59 2026 +0100

    fix gcc 14 warnings

commit 521422465f5ea34e55e970a08e64954b11e3fc54
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun Feb 15 14:32:32 2026 +0100

    initialize tmp variable

commit 66e11277380d590054449ba071f76b1462dd6379
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun Feb 15 13:54:26 2026 +0100

    whitespace

commit d3ea1e553d508faabe629b54b2b992fc58f3422f
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun Feb 15 13:54:17 2026 +0100

    surface some errors

commit 13817e62a5da53b9e0ae7fc21dde2224b2d16995
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun Feb 15 13:53:59 2026 +0100

    error exits cleanly

commit 9ccaa42b076347c574f8c07704229c6afcc12817
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sun Feb 15 11:10:45 2026 +0100

    remove outdated comment

commit 9d130d727dde6f0db2f2f6fab414033ea8235b9f
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat Feb 14 04:28:31 2026 +0100

    add assertion for little endian, make error messages unique

commit 7394cfb9a8f2bb14be2fe1239833d7516e66857c
Author: Martin Uecker <uecker@tugraz.at>
Date:   Sat Feb 14 04:12:49 2026 +0100

    relax for mac

commit bd733c3e92db7ad376c0af981b34a53685399fb6
Author: Philipp Ehses <philipp.ehses@dzne.de>
Date:   Tue Feb 10 16:39:36 2026 +0100

    Improve Python bindings and reduce I/O overhead
    
    - cfl.py: Fix .ra read/write; replace mmap with simple write
      to reduce overhead for small files
    - bart.py: Write .ra files (single binary file instead of two),
      lowering overhead for small files
    - general cleanup (remove obsolete from_future imports)

commit 4a8cf20890d6b849599d65507397cd306d686e9c
Author: Martin Uecker <uecker@tugraz.at>
Date:   Fri Feb 13 22:02:25 2026 +0100

    replace test

commit 491f2145a4b3653009be641d25843b6337c83364
Author: Martin Uecker <uecker@tugraz.at>
Date:   Fri Feb 13 20:23:04 2026 +0100

    fix dc component for 3D analytical simulation

commit 05c57d4d056dd7d5068daea5e35f25cafc5b4d94
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Thu Feb 12 13:35:07 2026 +0100

    seq tool: error message

commit e6d6c684cd6ad2cbe165d101918b2c90041db475
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Wed Feb 11 15:35:45 2026 +0100

    asl looping

commit 4b01a1f0767ae6f00663da5b72d5c3087cd0bb00
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Wed Feb 11 13:18:11 2026 +0100

    flags for different sequence modes
    
    cleanup interface config

commit 886e15a4601e8ba8a83bd56e1cf86ccc2343f8b2
Author: Blumenthal, Moritz <blumenthal@tugraz.at>
Date:   Thu Feb 12 11:21:29 2026 +0100

    use pULA for intialization of sample

commit c5935b0ef448d1533a7eaaff439464997d60a4a0
Author: Blumenthal, Moritz <blumenthal@tugraz.at>
Date:   Wed Feb 11 18:03:28 2026 +0100

    sample: fix initialization

commit 535a34efc63653483d6e03ddc2e8dd3f11ed15bc
Author: Martin Uecker <uecker@tugraz.at>
Date:   Thu Feb 12 15:51:20 2026 +0100

    move Fouriertransform of tetrahedron in its own function

commit f6cdbf5893d0cab379f20779668a264f33b192c0
Author: Martin Uecker <uecker@tugraz.at>
Date:   Thu Feb 12 14:49:26 2026 +0100

    add test for Fourier transform of polygon

commit e391902b9795dcf5c6778e36945859c95642f69f
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Mon Feb 9 19:29:49 2026 +0100

    fix config to custom params

commit 08b6d91f38bef82057834d76c8c24d3f8bbbaaeb
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Tue Feb 10 09:24:15 2026 +0100

    Makefile: cleanup wine utests

commit 3ebda53422ea3424af518d7cf574601cb2af0723
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Mon Feb 9 10:29:10 2026 +0100

    add checkbox for online recon

commit 22ba90f254511d25d4af4379047c90c936b3adca
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Mon Feb 9 10:28:41 2026 +0100

    smaller fixed interface (UI)

commit f1eafd8673b866d66e188152e088142fa516c77c
Author: Daniel Mackner <daniel.mackner@tugraz.at>
Date:   Fri Feb 6 18:52:04 2026 +0100

    proper name command parameter