bart (0.7.00-3) [PTS] [DDPO]

NEW: VCS has unreleased changes: 0.8.00-1 > 0.7.00-3

Git: https://salsa.debian.org/med-team/bart.git
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For Vcs-Git append -b branch to select the branch name; append [subdir] if the debian/ directory is not in the repository root.
The next upload will reset the information from the source package headers.
Branch: master
Path: debian/changelog
Browser: https://salsa.debian.org/med-team/bart
Last scan: 2022-10-01 12:38:33+00
Next scan: 2022-10-10 08:17:00+00
CI pipeline status: failed

Debian changelog in Git:

bart (0.8.00-1) UNRELEASED; urgency=medium

  * Turn off LTO build due to GCC bug #1017849. (Closes: #1015357)
  * Add std=c++14 to nvcc to fix build issues.
  * New upstream version.
  * Standards-Version: 4.6.1.0
  * Extend devel-package.
  * Mention machine learning in description.

 -- Martin Uecker <uecker@tugraz.at>  Sun, 25 Sep 2022 13:48:43 +0200

This branch is 11 commits ahead of tag v0.8.00

Git log:

commit 08bd6c77a6306bee5cd7765c24d18b38731cc65a
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sat Oct 1 13:32:08 2022 +0200

    properly install files

commit 6932bdb3a39c2047dd1f7b4b793dffedf2cb73d0
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sat Oct 1 13:18:48 2022 +0200

    mention machine learning

commit 9ca87d4d612fa822c1c520ab08ce0e1d0382a8d7
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sat Oct 1 13:17:04 2022 +0200

    extend devel package

commit 7cfc7b208bc8f33a6cec41615f540c5f98eaaa36
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sat Oct 1 13:02:28 2022 +0200

    update standard's version

commit 696f115824eadbce8c814218d3916615b27852f8
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Sep 25 21:51:23 2022 +0200

    relax failing test

commit ff104939a4ef57bb682f1d7516d779f2982968e4
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Sep 25 19:24:13 2022 +0200

    install get_bart_path.m

commit 0e2fe50cf896543e98001b6c723de9efe0a213c0
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Sep 25 15:25:10 2022 +0200

    update commands.txt added in Debian patch

commit cd48dfe85dd8b4b94db5839e50cd900a65fd69d3
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Sep 25 13:52:46 2022 +0200

    update changelog

commit 06b01678edfa3f6f7b03f799bca414bdf99bd943
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Sep 25 13:46:11 2022 +0200

    update patches

commit 5fdb82e3649e143a4714e2f3cb8e5d89aa95b3d3
Merge: 0916b19 eacc67b
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Sep 25 13:44:40 2022 +0200

    Merge tag 'v0.8.00'
    
    version 0.8.00
    
    Changes:
            - new tools: epg ictv sim reconet onehotenc measure mnist multicfl morphop fovshift
            - epg: EPG simulations
            - ictv: infimal convolution TV (experimental)
            - sim: Bloch simulations
            - reconet: deep learning reconstruction (MoDL, VarNET)
            - onehotenc: transform onehotencoded data to integer encoded
            - measure: compute MSE, SSIM, PSNR
            - mnist: simple mnist network for demonstration
            - multicfl: combine/split cfl files
            - morphop: morphological operations
            - fovshift: retrospectively shift the FOV
            - pics: tensorflow loss
            - pics: select wavelet type
            - pics: TGV/ICTV regularization (experimental)
            - moba: scaling parameters via command-line parameters
            - moba: various numerical fixes
            - moba: time timensions
            - moba: support for ADMM
            - moba: Bloch model recon with tests
            - moba: multi-gpu option
            - moba: scaling of TV derivatives
            - phantom: NIST phantom and others
            - phantom: rotation for TUBE and NIST phantom geometries
            - phantom: rectangle geometry
            - traj: flag for oversampled trajectory
            - traj: 3D uniform (half-sphere) trajectory
            - sim: output partial derivatives
            - twixread: updates for VD/VE versions
            - ismrmd: support for reading XML metadata
            - estdelay: more generic regarding un-/centered trajectories
            - tgv: for rof / tgv denoising
            - rmfreq: support for contrast changes and coilwise contrast
            - mobafit: T2 and diffusion fit
            - ecalib: make number of iterations for orthiter configurable
            - nufft: warn about incorrectly scaled trajectories
            - nlinv: fix noncart ENLIVE
            - pics: fix basis pursuit pics when using a sampling pattern (#285)
            - fakeksp: fix output argument
            - python interface: allow multiple files with the correct option string
            - python interface: faster write_cfl
            - library: New md functions: zacos, zsinh, zcosh, pdf_gauss, zmaxnorm, zcorr, tenmul
            - library: framework for neural networks
            - library: optimization algorithms: SGD, Adam, Adadelta, iPALM
            - library: linear operators: scale, zconj, zreal, permute, padding, repmat, scaled_sum
            - library: many new non-linear operators
            - library: support for using different wavelet type
            - library: nlop_attach, for attaching a random data pointer
            - library: nlop reshape function
            - library: allow forward nufft with toeplitz
            - library: tgv/ictv + multiple penalties + 3D
            - generic: radial DCF examples
            - generic: Add support for multi cfl
            - generic: POSIX shared memory files
            - generic: improve determinism
            - generic: improved parallelization and multi-gpu support
            - generic: add better support for use as shared libray
            - generic: bart for centos 7
            - generic: Fix Fedora Packages
            - generic: Windows support by MSYS2
            - generic: support for linking with cudann
            - generic: support for linking with tensorlfow
            - generic: add pythontest to github action
            - generic: LTO test builts
            - many other bug fixes and improvements

commit 0916b19429150590cceaeb8ced571ed6b95272b1
Author: Martin Uecker <uecker@tugraz.at>
Date:   Tue Aug 23 17:15:35 2022 +0200

    update uploaders

commit 38f3c96f13509633d631d0eef21e2a55470b97df
Author: Martin Uecker <uecker@tugraz.at>
Date:   Tue Aug 23 16:56:54 2022 +0200

    Fix GPU build issue

commit 151cc5ae93b325dd5e81da590bc7bf07122bf988
Author: Martin Uecker <uecker@tugraz.at>
Date:   Tue Aug 23 16:49:01 2022 +0200

    Turn off LTO builds

commit ca725db00da126a9545a6d2ab83c8c41d0f1f089
Author: Andreas Tille <tille@debian.org>
Date:   Sun May 1 21:10:21 2022 +0200

    Upload to unstable

commit 7f7e01684f7a92b5d38245ca747eb3189e497365
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun May 1 18:18:30 2022 +0200

    add allow-stderr to octave integration test
    
    This works around a bug in octave 7.1.0-2

commit e02270a7b25c828d0ab8f7378a6733c2e899071a
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sat Jan 1 14:59:13 2022 +0100

    allow non-free dependencies

commit f9499e120d0c4928216930e669e9f0353610b307
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sat Jan 1 14:08:10 2022 +0100

    never use git version

commit c00660d8b0cc9cc6ad2dbed3df4f93c629ad3ab2
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Dec 31 10:35:27 2021 +0100

    arm unit tests on s390x

commit 3090062db319a2ab7f6fe8fb5d224963f7190361
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Dec 31 00:34:18 2021 +0100

    turn off parallel make

commit 3f680ac585d190ed83cf2dced9096eaa8a6a6a35
Author: Nilesh Patra <nilesh@debian.org>
Date:   Fri Dec 31 01:00:55 2021 +0530

    Upload to unstable

commit 917bdb272c04778270a26598d7d9eb33985b898b
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Dec 30 16:32:54 2021 +0100

    update changelog

commit ebcfae85ef9eeff06543aed7b40bfe28ab8a1c53
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Dec 30 16:22:29 2021 +0100

    Revert "deterministic archive"
    
    This reverts commit 5cad340ed59f70020be9a85632b3233657cd3679.
    It was not sufficient for reproducibility, but triggers
    incorrect rebuilds (which is also problematic for cross-building).

commit a7853570b6c234ab6a20a34fc0df74b879b04e52
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Dec 30 15:35:23 2021 +0100

    remove compatibility patch

commit 75012fe32892233bc88c8b76438a691a78b18949
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Dec 30 13:30:44 2021 +0100

    tests on mips64el work

commit 543dd843f676772c309265d0203948b21ac8cbd9
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Dec 30 13:16:54 2021 +0100

    update workaround for compiler bug for armel

commit dc2c46452899fa573c310ed00d3d632a1a62652a
Author: Nilesh Patra <nilesh@debian.org>
Date:   Thu Dec 30 13:27:10 2021 +0530

    Upload to unstable

commit 092749f1fd32c2d21a0116ac0a59cd4e6834efa4
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Dec 30 07:04:20 2021 +0100

    backport fixes for tests

commit dce440f7b556898e762aed5157b97c30fab636ba
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 29 22:37:12 2021 +0100

    fix typo and reorder tests

commit 9cf305abf6053ad5c70cecddb563b35f876d3e33
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 29 22:02:24 2021 +0100

    Update patch to prevent deletion of commands.txt.

commit 3d35433eee83a470a7aa056b71e152d73ecd035d
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 29 22:02:24 2021 +0100

    Test that commands.txt is up-to-date

commit f6de618c01ba9717858aba2d9e29dc953b4934aa
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 29 21:41:49 2021 +0100

    do not update commands.txt for package builds

commit 45a48e77a6c3532607c2322ca0b2d3ab636f6957
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 29 20:02:09 2021 +0100

    add tests

commit 5cad340ed59f70020be9a85632b3233657cd3679
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 29 18:58:04 2021 +0100

    deterministic archive

commit a99fc6c1a077cc3bc9c91c55f1faa6ce95432cf9
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Oct 25 23:32:11 2021 +0200

    Update changelog

commit 08dca9da2e9099c92b2f254378de0943b524e0c6
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Wed Dec 29 14:34:09 2021 +0100

    workaround for compiler bug

commit ebd42db073bcff93034bdfa68697364c6de31052
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 27 08:04:36 2021 +0200

    routine-update: No tab in license text

commit 00d969c528ea1063b38e38580e6ed288c7f16910
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 27 08:04:31 2021 +0200

    routine-update: Standards-Version: 4.6.0

commit 0f940882c065001dce19fb57ec00f2dc7ae6d85b
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Oct 25 19:01:31 2021 +0200

    patch to relax failing test

commit 79a4ca89aab524758940c70bfa71d070013c5ee2
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Sep 13 18:40:25 2021 +0200

    Update patches

commit 5bdd1948b5148fce08fed60c57283464bbefee0c
Merge: 723bf45 d1b0e57
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Sep 13 18:38:01 2021 +0200

    Merge tag 'v0.7.00'
    
    version 0.7.00
    
    Changes:
            - new tools: signal mobafit roistat pol2mask conway
            - signal: tool to simulate MRI signals
            - mobafit: tool for point-wise fitting
            - roistat: tool to compute ROI statistics
            - pol2mask: tool to compute masks from polygons
            - conway: Conway's game of life
            - moba: model-based recon for multi-echo FLASH
            - moba: model-based T2 mapping
            - moba: make coil smoothness configurable
            - moba: add option for k-space filter
            - moba: enable cartesian k-space data in moba
            - wshfl: Add fista option
            - estdelay: export to file
            - traj: multi-echo trajectory
            - traj: reading of gradient delays from file
            - phantom: random tube phantom
            - nlinv: non squared image sizes
            - generic: additional tests and unit tests
            - generic: continuous integration for gitlab
            - generic: support for BART_COMPAT_VERSION
            - generic: warning for dirty git versions
            - generic: target for libismrm.a if ISMRMRD enabled
            - generic: support for IBM POWER9 HPC ppc64le
            - generic: MATLAB/Octave test
            - library: add support for long options
            - library: new functions: md_zslessequal
            - library: linop_reshape_in, linop_reshape_out
            - library: generalized linop_sum
            - library: operator_stack along an arbitrary dimension
            - library: new zsmax prox operator
            - library: continuation for lsqr/itop
            - library: warmstart for lsqr
            - library: BLAS accelerated strided operations
            - library: add more geometry functions
            - library: more operator_p helper functions
            - many other bug fixes and improvements

commit 723bf45e61ec3726ff23c070edc12ef7dc8e7ccf
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Aug 29 09:15:34 2021 +0200

    update patches

commit 0b4297e0497ef7d0346747b223be72251afc407c
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Aug 26 15:09:07 2021 +0200

    update changelog

commit e666efa19ecc3dafa57c045d66102084f53a103f
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Aug 26 15:05:00 2021 +0200

    update copyright

commit d1b0e576c3f759089915565d5bf57832acf7b03e
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Mon Mar 1 15:17:01 2021 +0100

    bump version

commit 85961069461bc254aef881a15e8f90ebd9523d6c
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Feb 26 20:00:54 2021 +0100

    correct typo

commit e4cb8183e42d878d62e49978339863121fe4d7e6
Author: Andreas Tille <tille@debian.org>
Date:   Wed Feb 24 08:34:41 2021 +0100

    DOI is only allowed inside Reference

commit 266b3d206df202d4cd130ec40049e79684754c88
Author: Andreas Tille <tille@debian.org>
Date:   Sun Feb 21 12:23:52 2021 +0100

    Do not repeat Homepage in upstream/metadata.  It can be found in debian/control

commit 45dde727277eb9ab5b186021a53ad852d5f8f09c
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Feb 21 08:53:09 2021 +0100

    Set upstream metadata fields: Homepage, Contact, Funding, Cite-As

commit e1991487de3826b96e4cfebb65fbf7902ac62a6d
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Tue Feb 2 13:42:58 2021 +0100

    signal: add option for off resonance

commit 49d447da2d55bebdb193555809318bb2bf943a7f
Author: Zhengguo Tan <zhengguo.tan@med.uni-goettingen.de>
Date:   Mon Feb 8 14:55:25 2021 +0100

    enable switch to another fat spectrum
    
    - moba uses '--fat_spec_0' as the switch
    - default spectrum is FAT_SPEC_1

commit 762da30b5aea196800dae97276e68f194ff3db6c
Author: Xiaoqing Wang <xiaoqing.wang@med.uni-goettingen.de>
Date:   Sat Dec 26 20:37:25 2020 +0100

    use the signal tool to simulate the IR Look-Locker FLASH Dictionary

commit d35ca140a4034c85e89e05a4557cb070d3a011b1
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Feb 12 11:17:57 2021 +0100

    add command-line option for alpha_min0

commit 6b23e1764474746280994c057a31028bd72fac69
Author: Christian Holme <christian.holme@med.uni-goettingen.de>
Date:   Fri Feb 5 16:27:05 2021 +0100

    misc/opts: add missing OPTL_CLEAR

commit 5873cb0b09858b22d07da053a4190298df7df9c1
Author: Christian Holme <christian.holme@med.uni-goettingen.de>
Date:   Wed Feb 3 14:40:57 2021 +0100

    moba: make coil smoothness configurable

commit 535bba9b72a9a5f897eef2f26897df865460c89e
Author: Siddharth Srinivasan <sidward@users.noreply.github.com>
Date:   Fri Feb 12 02:02:28 2021 -0800

    wshfl: Add fista option (#245)

commit 7d90203b62746ec01a8c2658acd64f2c1e82087f
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Feb 12 10:59:36 2021 +0100

    rename HPC to SCALAPACK

commit bb6703b5746e867f7897dabde19465a2dde5bc10
Author: Monius <m1105930979@gmail.com>
Date:   Tue Jan 12 02:14:30 2021 +0800

    add support for IBM POWER9 HPC ppc64le

commit cf15be80cdc3346f2519c0bbdfeb771d400d2e39
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Fri Feb 12 09:14:54 2021 +0100

    extend ci

commit 0676133696ed32ec59b2fdfce80b58f03eca6155
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Feb 11 21:02:51 2021 +0100

    clang fixes

commit b4f8b67eb271916affc9afdbfb94dd15743090bd
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Thu Feb 11 19:33:26 2021 +0100

    change cuda default path

commit a139b2c0ab22c92f4ea13fbd459fecc0e593ab8e
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Feb 7 22:26:26 2021 +0100

    add warning for dirty git versions

commit 3385907aab71571d1ecf80e854d22e32b676e394
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sun Feb 7 22:15:14 2021 +0100

    coding style

commit cf3e33fb5fae5d610a4d3c3e90d091d3f728f107
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sat Dec 19 10:12:12 2020 +0100

    remove /lib64 suffix for cuda library paths

commit 57c30a05f093e67a1445ba93dea39e42e44730e8
Author: Andreas Tille <tille@debian.org>
Date:   Mon Sep 21 16:19:34 2020 +0200

    Upload to unstable

commit d5d476cdf5f25c8ccaa92a34dc86c9f8bde2d9e0
Author: Andreas Tille <tille@debian.org>
Date:   Mon Sep 21 16:16:08 2020 +0200

    Run tests on i386, mips64el and s390x but make the test succeed in any case

commit 1ac7a77c95dc3a857ca6db989e5481341f87da89
Author: Andreas Tille <tille@debian.org>
Date:   Mon Sep 21 16:05:24 2020 +0200

    Remove redundant d/gbp.conf

commit dee87990f47b3d9a8093063fa66480e7513baf90
Author: Andreas Tille <tille@debian.org>
Date:   Thu Sep 10 09:02:21 2020 +0200

    routine-update: Ready to upload to unstable

commit 40092fe30f33160438487d6b07b3db5a9076cfd1
Author: Andreas Tille <tille@debian.org>
Date:   Thu Sep 10 08:59:31 2020 +0200

    Set upstream metadata fields: Bug-Database, Bug-Submit.
    
    Changes-By: lintian-brush
    Fixes: lintian: upstream-metadata-missing-bug-tracking
    See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html

commit d02a6a890acb6c5da6dc68a33c5edfec4bd4dd9b
Author: Andreas Tille <tille@debian.org>
Date:   Thu Sep 10 08:59:29 2020 +0200

    debian/copyright: use spaces rather than tabs to start continuation lines.
    
    Changes-By: lintian-brush
    Fixes: lintian: tab-in-license-text
    See-also: https://lintian.debian.org/tags/tab-in-license-text.html

commit 92e183a5aae4f94d87e167a01b044763457bd6bf
Author: Andreas Tille <tille@debian.org>
Date:   Thu Sep 10 08:59:23 2020 +0200

    routine-update: debhelper-compat 13

commit 2a8abf0ca3c5a85a68dc5c05fae404fe37ab1a38
Author: Andreas Tille <tille@debian.org>
Date:   Thu Sep 10 08:59:05 2020 +0200

    Mark tests superficial

commit fdca821ee20cc30bf1b15ece13a0c27eca5ac552
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jul 11 22:40:00 2020 +0200

    Add salsa-ci

commit 511f05b8a29a227fa75e35d4fb6be325235b869a
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jul 11 22:38:44 2020 +0200

    Use ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))

commit 93fe929dc0ce4aae0ebe15419737c0413f2f96e8
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jul 11 22:36:58 2020 +0200

    DEP5 syntax

commit 1fac6933fb67350961a50b09f881494e8ff05faa
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jul 11 22:23:28 2020 +0200

    Upload to unstable

commit 58ee511e05bdbd66dc8930750ff5ade6e82ad356
Author: Martin Uecker <martin.uecker@med.uni-goettingen.de>
Date:   Sat Jul 11 15:51:34 2020 +0200

    update changelog