debian-med (3.3) [PTS] [DDPO]

COMMITS: VCS has seen 23 commits since the debian/3.3 tag

Git: https://salsa.debian.org/blends-team/med.git
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Branch: master
Path: debian/changelog
Browser: https://salsa.debian.org/blends-team/med
Last scan: 2019-08-24 11:24:24+00
Next scan: 2019-08-31 00:24:00+00

Debian changelog in Git:

debian-med (3.3) unstable; urgency=medium

  * Re-render tasks with Buster release state

  * start of automatic changelog entry * 
  
  * Changes in metapackage dependencies
   -med-bio
    added:
      Recommends: pilercr, mosdepth, quast, r-cran-webgestaltr, ragout,
                  kraken2, gffread, filtlong, umis, sailfish, sibelia,
                  atropos, braker, virulencefinder, vcfanno, biobambam2,
                  python3-pybel, kmerresistance, optitype, spaln, kma,
                  stringtie, oncofuse, optimir, kallisto, sina, dendroscope,
                  multiqc, python3-geneimpacts, bismark
      Suggests:   r-cran-forecast
    removed:
      Recommends: pybel
      Suggests:   melting-gui
   -med-bio-dev
    added:
      Recommends: libbio-samtools-perl, libbio-asn1-entrezgene-perl,
                  libnexml-java, libbio-tools-run-alignment-clustalw-perl,
                  libbigwig-dev, libbio-tools-phylo-paml-perl,
                  libbio-chado-schema-perl, python3-cgecore, libbio-scf-perl,
                  python3-mirtop, libbio-tools-run-alignment-tcoffee-perl,
                  python3-pybel
      Ignore:     golang-github-biogo-hts-dev
   -med-bio-ngs
    added:
      Recommends: kraken2, stringtie
   -med-cms
    added:
      Recommends: xnat
    removed:
      Suggests:   xnat
   -med-imaging
    added:
      Recommends: xnat
    removed:
      Suggests:   xnat
   -med-imaging-dev
    added:
      Recommends: libvtk7-dev
      Suggests:   libvtk6-dev
    removed:
      Recommends:  libvtk6-dev
   -med-psychology
    added:
      Recommends:  r-cran-psychometric, r-cran-psych, r-cran-psyphy,
                   r-cran-psychotree
    removed:
      Recommends:  psychotree, psychometric, miscpsycho, psyphy, psych

 -- Andreas Tille <tille@debian.org>  Fri, 25 Jan 2019 14:49:50 +0100

This branch is 23 commits ahead of tag debian/3.3

Git log:

commit 89b456d21fcc31ccac90f7335aec1cb446343cfc
Author: Steffen Möller <moeller@debian.org>
Date:   Sat Aug 24 10:34:47 2019 +0000

    Alphabetical eordering and addition of a series of r-cran+r-bioc packags

commit c85afb9d56a3ff1de5d54ac94c75f45ebdcb507d
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Aug 22 12:55:26 2019 +0000

    Update python- to python3, some more recent packages
    
    Some maybe better show up only on bio-dev

commit dd57d389b52bc7e4d62e935bc11721aa8bb3903a
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Aug 22 12:47:38 2019 +0000

    Added a couple of recent R packages

commit 6628979d37a09d3134e367b1f1284f1ab8fa32e9
Author: Steffen Möller <moeller@debian.org>
Date:   Tue Aug 20 12:56:21 2019 +0000

    Update bio - added R packages

commit 0ea61cb18ed1b81d8ce343798661fd7975e0bcef
Author: Steffen Möller <moeller@debian.org>
Date:   Wed Aug 14 14:05:40 2019 +0000

    Update bio-dev with cthreadpool-dev
    
    Maintained in d/science but a dependency for vienna-rna

commit 7b80715eecb33ee2ae32644f38c5f05e69086ff5
Author: Steffen Möller <moeller@debian.org>
Date:   Tue Aug 13 13:13:19 2019 +0000

    Added r-cran-seurat and -sctransform to bio

commit 9a31e69bb490e31aebdcb08df5a7a911cdae24e5
Author: Graham Inggs <ginggs@debian.org>
Date:   Mon Aug 12 18:38:19 2019 +0200

    Binaries are shipped in python3-imageio since 2.4.1-1

commit 25bad5f1b931bf1ccd6ffedcbf9c59366cdcf000
Author: Steffen Möller <moeller@debian.org>
Date:   Mon Aug 12 12:00:54 2019 +0000

    Update bio-dev
    
    Added three packages of which libgclib was just accepted.

commit f03320396e2915bdd5a09806c0d222d1cb3009d4
Author: Steffen Möller <moeller@debian.org>
Date:   Sun Aug 11 15:36:56 2019 +0000

    Added pigx-rnaseq

commit a5eeec77b1994c15afbf9cb9becf7e3073bdec8b
Author: Steffen Möller <moeller@debian.org>
Date:   Sun Aug 11 15:30:43 2019 +0000

    Update bio with python3-deeptools
    
    Deeptools should not only appear on -dev

commit febc74ad251ab3726e213f256bdd96ff0811c211
Author: Steffen Möller <moeller@debian.org>
Date:   Sun Aug 11 15:28:38 2019 +0000

    Updated bio-dev with deeptools
    
    and immediate dependencies

commit 1c42e2f15472c1178003fb0a39f243f58a83b169
Author: Steffen Möller <moeller@debian.org>
Date:   Tue Aug 6 09:42:10 2019 +0000

    Updated med/bio for r-bioc-tximport

commit 7381f7ec61aa52d67784ed4a33df1b823efbac8d
Author: Steffen Möller <moeller@debian.org>
Date:   Mon Aug 5 18:17:12 2019 +0000

    Updated bio

commit ffac2a472d452a23c2ccbcf9bdf14122d2c874bc
Author: Steffen Möller <moeller@debian.org>
Date:   Fri Aug 2 16:46:17 2019 +0000

    Added python-pyflow
    
    Somewhat problematic since this has apparently not yet seen the light of Python3

commit 57798c0b87cfe676c2dae7406afb780df7a32e63
Author: Steffen Möller <moeller@debian.org>
Date:   Fri Aug 2 13:57:30 2019 +0000

    Updated bio-dev with python3-pycosat
    
    Found locally.

commit 33de54790d32c45221809d8c9ef9cb899f7e2d96
Author: Steffen Möller <moeller@debian.org>
Date:   Fri Aug 2 10:57:43 2019 +0000

    Added packages referenced for bcbio

commit 810f711adf118d20316cb8a3286967f0f7350a14
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Aug 1 22:22:22 2019 +0000

    Updated bio-dev with python3-alignlib

commit dc51e8937f575debbbeff3d14f64d0b01f0aa689
Author: Andreas Tille <tille@debian.org>
Date:   Thu Aug 1 09:00:05 2019 +0200

    Add libmaus2-dev

commit 998809a1283a4438db590aa07b1a5e7cfc73d23d
Author: Andreas Tille <tille@debian.org>
Date:   Wed Jul 17 11:00:53 2019 +0200

    Add skesa

commit e1caa9b4ed078471c38564fd94d826ce882d5342
Author: Andreas Tille <tille@debian.org>
Date:   Mon Jul 15 21:17:37 2019 +0200

    Recommends: mmseqs2

commit 6495880cde804db9e5a8df9fed418a63d30f1eb7
Author: Andreas Tille <tille@debian.org>
Date:   Mon Jul 15 08:19:44 2019 +0200

    Recommends: mindthegap

commit 65b8049c78d8090f7f3b48ae75aa64cf16af3c45
Author: Steffen Möller <moeller@debian.org>
Date:   Wed Jul 10 17:51:17 2019 +0000

    Added wham-align to bio-ngs

commit 9f49d6423285c252fde6a5e07a94ed370b02ae77
Author: Steffen Möller <moeller@debian.org>
Date:   Wed Jul 10 17:50:29 2019 +0000

    Added wham-align to bio