Debian Quality Assurance

debian-med (3.1) [PTS] [DDPO]

NEW: VCS has unreleased changes: 3.2 > 3.1

• Git: https://salsa.debian.org/blends-team/med.git
• 
  Enter a full Vcs-* header, supported schemes are: Vcs-Bzr, Vcs-Cvs, Vcs-Darcs, Vcs-Git, Vcs-Hg, Vcs-Mtn, Vcs-Svn.
  For Vcs-Git append -b branch to select the branch name; append [subdir] if the debian/ directory is not in the repository root.
  The next upload will reset the information from the source package headers.
• Branch: master
• Path: debian/changelog
• Browser: https://salsa.debian.org/blends-team/med
• Last scan: 2018-12-16 09:46:49+00
• Next scan: 2018-12-17 06:53:00+00
• Debian changelog in Git:

  debian-med (3.2) UNRELEASED; urgency=medium
  
    * Fix broken reference to alioth
  
   -- Andreas Tille <tille@debian.org>  Sun, 29 Jul 2018 02:22:44 +0200

• This branch is 60 commits ahead of tag debian/3.1
• Git log:

  commit a36541444547405b3545708c3f7f694187e55464
  Author: Andreas Tille <tille@debian.org>
  Date:   Thu Dec 13 13:32:57 2018 +0100
  
      Add deepbinner
  
  commit a583ac3f7d6ace1e1e3ea817e65f6d3dd969c4cd
  Author: Andreas Tille <tille@debian.org>
  Date:   Thu Dec 13 09:21:35 2018 +0100
  
      Add mrtrix3, drop Publication data of mrtrix (in favour of putting these into the package information)
  
  commit 82524a429c20ab24f9013047d590f01e01580b09
  Author: Andreas Tille <tille@debian.org>
  Date:   Wed Dec 5 09:47:50 2018 +0100
  
      Add seq-seq-pan
  
  commit 669a55b58130b445c89d7e04420be4975278f6fe
  Author: Andreas Tille <tille@debian.org>
  Date:   Wed Nov 28 14:47:16 2018 +0100
  
      Since bio-ngs is a subset of bio mention fastp also in bio
  
  commit 687bb19da43aec61abf6eac3f2f44873fdcef337
  Author: Dylan Aïssi <daissi@debian.org>
  Date:   Wed Nov 28 06:35:24 2018 +0000
  
      Update bio-ngs: add fastp
  
  commit 73c3c058e64e084f1805915cf30d2a04caa4d4f2
  Author: Dylan Aïssi <daissi@debian.org>
  Date:   Wed Nov 28 06:33:12 2018 +0000
  
      Switch biosyntax to its metapackage
  
  commit 3b4ab248f7b64a0019138a78a751e4e969ceed06
  Author: Steffen Möller <moeller@debian.org>
  Date:   Tue Nov 27 11:20:03 2018 +0000
  
      Added presto to bio
  
  commit bb26b863918beef00e6b4d1516db8f5f40f92247
  Author: Steffen Möller <moeller@debian.org>
  Date:   Thu Nov 15 16:51:12 2018 +0000
  
      Update bio-dev
  
  commit 28a24725ee1e13ca44f29982d6f800b57ca712c3
  Author: Steffen Möller <moeller@debian.org>
  Date:   Thu Nov 15 16:45:44 2018 +0000
  
      Added changeo and dependencies to bio-ngs
  
  commit 67f2c5f818a82034b6d2c962341a20e2ae75cf71
  Author: Steffen Möller <moeller@debian.org>
  Date:   Thu Nov 15 16:42:05 2018 +0000
  
      Added python-airr to bio-dev
  
  commit e5736724540d9a2d78db656b3084b74522e560b0
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Nov 7 13:55:32 2018 +0000
  
      Added igblast to bio
  
  commit af77bb8e92e90bfc2f11f4f13173399d932f84cd
  Author: Steffen Möller <moeller@debian.org>
  Date:   Tue Nov 6 15:17:09 2018 +0000
  
      Added changeo (another immune repertoire software) to bio
  
  commit df07674c97946eebbd8284a9713f0b38ed851fec
  Author: Andreas Tille <tille@debian.org>
  Date:   Sun Oct 28 07:02:48 2018 +0100
  
      s/python3-biomaj3/python3-biomaj3-daemon/
  
  commit c80e5cf29453a3e76ff0909dfb1a106b37f249ce
  Author: Andreas Tille <tille@debian.org>
  Date:   Fri Oct 26 11:54:50 2018 +0200
  
      tracerunner now in Git
  
  commit 34b7e48b25b38f05c005578d12d21f7875b657c2
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Oct 24 17:24:40 2018 +0000
  
      Added GramAlign - currently on salsa only.
  
  commit 71d3d43a2578770f18f10b351fa363cc95683982
  Author: Andreas Tille <tille@debian.org>
  Date:   Wed Oct 24 13:43:02 2018 +0200
  
      Add bax2bam
  
  commit d74ffcff78c96666f579a67057c3b60c73f12dae
  Author: Steffen Möller <moeller@debian.org>
  Date:   Tue Oct 23 12:34:58 2018 +0000
  
      Added PyBEL.
  
  commit d741df6ea6780ef18dff53c2f872595f5589c0ca
  Author: Andreas Tille <tille@debian.org>
  Date:   Wed Oct 17 08:32:58 2018 +0200
  
      Add epifire
  
  commit e301eb55dea9dbab8384c136f293f0f01dd5a38e
  Author: Andreas Tille <tille@debian.org>
  Date:   Tue Oct 16 15:32:17 2018 +0200
  
      Add snakemake
  
  commit 1e349f805c95d029c2004e99f93710f7ed6dd7a8
  Author: Andreas Tille <tille@debian.org>
  Date:   Tue Oct 16 15:26:56 2018 +0200
  
      Add pyvcf
  
  commit 61cf47bf6ce3366b57ae475173c3c26484f326fd
  Author: Andreas Tille <tille@debian.org>
  Date:   Tue Oct 16 15:10:04 2018 +0200
  
      Add murasaki-mpi
  
  commit 83260eba370d9ee8f96a7cc9843bda7e06685011
  Author: Andreas Tille <tille@debian.org>
  Date:   Sat Oct 6 11:20:19 2018 +0200
  
      Add paipline and plasmeedseeker
  
  commit d2f5d0c63e629a7353913e2fca2ae9b1a18f395e
  Author: Andreas Tille <tille@debian.org>
  Date:   Wed Sep 19 11:06:01 2018 +0200
  
      Add r-bioc-cner (even if implicitly installed via r-bioc-tfbstools
  
  commit 01b370d4b6052700eac9991a15634b8bf305784b
  Author: Andreas Tille <tille@debian.org>
  Date:   Tue Sep 11 08:27:59 2018 +0200
  
      Add r-cran-sdmtools
  
  commit 93de3e4151579c80601d375da3a8a6a61b235382
  Author: Andreas Tille <tille@debian.org>
  Date:   Sat Sep 8 08:33:29 2018 +0200
  
      mview is now in Git and information is taken from there
  
  commit 55132eadd15636faad18298453f8f96c454bd552
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Sep 5 12:11:09 2018 +0000
  
      ELPH is now in distribution
      
      Also Updated upstream URL of Lucy.
  
  commit 61a0b0b4061605f179e11d1c978ff5ef3f60a2ec
  Author: Andreas Tille <tille@debian.org>
  Date:   Sat Aug 25 23:29:27 2018 +0200
  
      Do not advertise Python2 version any more if Python3 version exists
  
  commit b538749edd816ef08b94b2758e907c543d0c93cf
  Author: Andreas Tille <tille@debian.org>
  Date:   Tue Aug 21 20:52:36 2018 +0200
  
      Add cct
  
  commit 709bcde36a65dedfc30822dac030b089d2ba5de5
  Author: Andreas Tille <tille@debian.org>
  Date:   Fri Aug 17 11:48:22 2018 +0200
  
      Add minimap2
  
  commit 238289831875a5a375459dd5c0f3ed230147104d
  Author: Dylan Aïssi <bob.dybian@gmail.com>
  Date:   Wed Aug 8 12:53:00 2018 +0000
  
      Add minimac4 to bio
  
  commit 0d1d5a5fe9ced97d8b0db2b7bc520b553f5b0d0e
  Author: Andreas Tille <tille@debian.org>
  Date:   Fri Aug 3 08:24:07 2018 +0200
  
      The version was striped from the package name of some libs
  
  commit 09dd424c101ff059e529d1cfe30bd032347f89af
  Author: Steffen Möller <moeller@debian.org>
  Date:   Tue Jul 31 12:26:35 2018 +0000
  
      Added python-seqcluster to bio-dev
  
  commit fd49a379ef06eeeddef0b33a166f6c4a4543e5ba
  Author: Andreas Tille <tille@debian.org>
  Date:   Sun Jul 29 02:24:36 2018 +0200
  
      Fix broken reference to alioth
  
  commit f4be09261492c9c66bc856fe88cdeda7f68ee78a
  Author: Steffen Möller <moeller@debian.org>
  Date:   Fri Jul 27 20:34:22 2018 +0000
  
      Update bio
  
  commit d7f3c2d0409699762bab078e3c77be1b36e58d6e
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Jul 18 10:43:10 2018 +0000
  
      Added yaha to bio
  
  commit a2d02b4cf11c53aef303d75f97217cfb8b5e6765
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Jul 11 16:48:19 2018 +0000
  
      Added mirtop to bio
  
  commit bf359d629ef8c42bf3a5ac2c355056b274f8d617
  Author: Steffen Möller <moeller@debian.org>
  Date:   Tue Jul 10 21:19:23 2018 +0000
  
      Added samblaster to bio
  
  commit 5c662d4a1269ff618e9429bceceb4e0e03115ccc
  Author: Steffen Möller <moeller@debian.org>
  Date:   Tue Jul 10 20:14:12 2018 +0000
  
      Update bio
  
  commit b38d00157bca90a60bdb3a9eb04ac925b88b3beb
  Author: Andreas Tille <tille@debian.org>
  Date:   Tue Jul 10 10:47:34 2018 +0200
  
      Package hyphygui does not build any more
  
  commit 1accf9078f41bf06e64db9e31da7f716b4cd9839
  Author: Steffen Möller <moeller@debian.org>
  Date:   Sun Jul 8 18:04:22 2018 +0000
  
      Update bio-dev
  
  commit 409dc7fb93acaa6aa1ffeb254e39c3801cc04075
  Author: Steffen Möller <moeller@debian.org>
  Date:   Sun Jul 8 16:47:41 2018 +0000
  
      Updated bcbio in bio
  
  commit 1b53fa9042caf474529419fcd0bbbdd69edab8fb
  Author: Andreas Tille <tille@debian.org>
  Date:   Sun Jul 8 17:34:03 2018 +0200
  
      There is no point in using commets - just remove the entries fully
  
  commit d0924e7095174d5d4bb0d3b242fd971c4350f7c4
  Author: Steffen Möller <moeller@debian.org>
  Date:   Sat Jul 7 15:01:15 2018 +0000
  
      Updated URL of tripal
  
  commit 379e050d83ae2d57323e316e740af3a353e1f78d
  Author: Steffen Möller <moeller@debian.org>
  Date:   Sat Jul 7 12:39:57 2018 +0000
  
      Removed libgff-perl from bio-dev
  
  commit 1ce2e21690f72084b7d40f940e2e47b52f638755
  Author: Steffen Möller <moeller@debian.org>
  Date:   Sat Jul 7 12:37:45 2018 +0000
  
      Removed octave bioinfo plugin from bio-dev
  
  commit fc1981e83ff16ac60ac2a411c322a5e3c644f51c
  Author: Steffen Möller <moeller@debian.org>
  Date:   Fri Jul 6 18:11:58 2018 +0000
  
      Update bio-dev
  
  commit 66d3b14a2f52fed03cc50dbf4d685be6d041a078
  Author: Andreas Tille <tille@debian.org>
  Date:   Wed Jul 4 22:57:19 2018 +0200
  
      Referencer was removed from Debian
  
  commit cf03a16b3846cda1f69221e048cf923fe78ee908
  Author: Andreas Tille <tille@debian.org>
  Date:   Wed Jul 4 21:19:27 2018 +0200
  
      Fully remove commented entries - we have Git for restoring things if ever needed
  
  commit 9e602ca217024bc93bc83859fa45df44346889fd
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Jul 4 15:31:27 2018 +0000
  
      Stale URL.
  
  commit 82598a9475f099892b896cb0c0920fb34502941e
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Jul 4 15:30:11 2018 +0000
  
      Hilbertvis is kind of forgotten, I tend to think.
  
  commit 9ba96df3ed031325b5ec50bba31dc5ee36adaabc
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Jul 4 15:16:56 2018 +0000
  
      Removed some uninspiring ones from bio.
  
  commit 216e88f016714cc5733e3688a8e11a095b6a2ac5
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Jul 4 09:56:20 2018 +0000
  
      Update bio - omegamap and sweed are in salsa
  
  commit fe468b6a29e303337d76aaee7d27a744346a47c3
  Author: Andreas Tille <tille@debian.org>
  Date:   Wed Jul 4 10:02:53 2018 +0200
  
      qutemol as another alternative for rasmol
  
  commit dc900e0bffc58d3a22c73e62110e9de13d7c0b7c
  Author: Andreas Tille <tille@debian.org>
  Date:   Tue Jul 3 21:21:08 2018 +0200
  
      Add viewmol
  
  commit 51a6ac3f6255675c41c63198653d2f7ac649e6b1
  Author: Steffen Möller <moeller@debian.org>
  Date:   Fri Jun 22 16:11:18 2018 +0000
  
      Updated two URLs for bio
  
  commit b703d307c6ea8a7ba8828011f53a61e705ccf21d
  Author: Steffen Möller <moeller@debian.org>
  Date:   Sun Jun 17 18:09:41 2018 +0000
  
      Added igor to bio
  
  commit a1cc925e5766301d37ee698d916b988b4f153477
  Author: Steffen Möller <moeller@debian.org>
  Date:   Sun Jun 17 18:09:02 2018 +0000
  
      Added igor to bio-ngs
  
  commit 84f1a263be9bee69591353e7231847a642a8812d
  Author: Steffen Möller <moeller@debian.org>
  Date:   Sat Jun 16 15:33:51 2018 +0000
  
      Update bio-ngs with a few immune repertoire packages.
  
  commit 27eff731aadcfdb1fb41b1a5ba66850f06d30093
  Author: Steffen Möller <moeller@debian.org>
  Date:   Sat Jun 16 15:32:38 2018 +0000
  
      Updated a few immune repertoire sequencing R packages to bio
  
  commit 468011180677c6d5483e44289928bc0b5535c0a8
  Author: Steffen Möller <moeller@debian.org>
  Date:   Wed Jun 13 20:58:33 2018 +0000
  
      Added toil and galaxy-lib to bio-dev

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