dipy (0.14.0-1)
[PTS] [DDPO]
NEW: VCS has unreleased changes: 1.1.1-1 > 0.14.0-1
- Git: git://anonscm.debian.org/pkg-exppsy/dipy.git
-
- Branch: debian
- Path: debian/changelog
- Browser: http://anonscm.debian.org/gitweb/?p=pkg-exppsy/dipy.git
- Last scan: 2020-06-01 22:25:04+00
- Error: The Vcs URL git://anonscm.debian.org/pkg-exppsy/dipy.git is deprecated/defunct, https://anonscm.debian.org/git/pkg-exppsy/dipy.git was tried instead. Please update the Vcs field in debian/control.
- Next scan: 2020-06-03 01:17:00+00
- Debian changelog in Git:
dipy (1.1.1-1) UNRELEASED; urgency=medium
[ Yaroslav Halchenko ]
* debian/
+ provide python3 packaging
+ suggest python-dipy-doc (Closes: #849904)
[ Andreas Tille ]
* cme fix dpkg-control
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 12 (routine-update)
* Testsuite: autopkgtest-pkg-python (routine-update)
* Drop Python2 package
Closes: #936400, #942973, #923657
* Versioned Build-Depends: python3-nibabel (>= 3.0.0)
-- Yaroslav Halchenko <debian@onerussian.com> Thu, 12 Jul 2018 11:59:34 -0400
- This branch is 560 commits ahead of tag 0.15.0
- Git log:
commit 21d6928b3f2b71a3886f2f3e87a8167e1f73f0b5
Author: Andreas Tille <tille@debian.org>
Date: Tue Mar 3 11:33:56 2020 +0100
Versioned Build-Depends: python3-nibabel (>= 3.0.0)
commit 7d123ab06a9e2aa6575ac410a0ab0419bbc2bb84
Author: Andreas Tille <tille@debian.org>
Date: Tue Mar 3 11:32:03 2020 +0100
Remove more stuff that's only needed for Python2
commit ebd9bc3584f2f3154ccb3aace6544cb6dfe2abaf
Author: Andreas Tille <tille@debian.org>
Date: Tue Mar 3 11:27:32 2020 +0100
Drop Python2 package
commit 18c653765dfa8b4d92c1de3df56ce7dd12f8e6a9
Author: Andreas Tille <tille@debian.org>
Date: Tue Mar 3 11:21:19 2020 +0100
routine-update: Testsuite: autopkgtest-pkg-python
commit f2060f5c32f2804462159a8b6944a8425d4b658b
Author: Andreas Tille <tille@debian.org>
Date: Tue Mar 3 11:21:13 2020 +0100
routine-update: debhelper-compat 9
commit 063e392c199ede4f877d123fd8242c8f737361b4
Author: Andreas Tille <tille@debian.org>
Date: Tue Mar 3 11:21:13 2020 +0100
routine-update: Standards-Version: 4.5.0
commit 0cc801147d80835ec6058d032b9e145cf178a184
Merge: d0e9fda8 81389b03
Author: Andreas Tille <tille@debian.org>
Date: Tue Mar 3 11:21:13 2020 +0100
Update upstream source from tag '1.1.1'
Update to upstream version '1.1.1'
with Debian dir b8c346c03168ae2edc734871e5f8de2a9b6cc0c5
commit d0e9fda870fb78fe91f2ef0d7f25ead4881ce031
Author: Andreas Tille <tille@debian.org>
Date: Tue Mar 3 11:20:56 2020 +0100
routine-update: New upstream version
commit 81389b03a70b2c559fccb13711d63f354164bc90
Author: Andreas Tille <tille@debian.org>
Date: Tue Mar 3 11:20:56 2020 +0100
New upstream version 1.1.1
commit 0840f3f187a3691b08edf4def8daf89c5382c082
Author: Andreas Tille <tille@debian.org>
Date: Fri Jan 25 23:19:45 2019 +0100
Restore versioned Build-Depends: python3-nibabel (>= 2.1.0)
commit 285c61e7fcf016d15a0f6669ae0dbfdd3e7f7f0d
Author: Andreas Tille <tille@debian.org>
Date: Fri Jan 25 21:28:51 2019 +0100
cme fix dpkg-control
commit 2471c331e98a5a1284ce00ba0dfaccec47c6fcdd
Author: Andreas Tille <tille@debian.org>
Date: Fri Jan 25 21:23:55 2019 +0100
0.14.0-2 is actually unreleased
commit 2e45f1d63e5de9f512b7cec39808bc4b7eaf5855
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sat Dec 22 21:57:35 2018 -0500
Refreshed deb_allow_older_cython patch
commit f51d359eb1ed9ed5e70cf5589884e1e1a1f0edf2
Merge: af2aef8d 98fa5b85
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sat Dec 22 21:56:37 2018 -0500
Merge tag '0.15.0' into debian
Release 0.15
* tag '0.15.0': (570 commits)
bump version to 0.15.0
typo
adress ariel comment
highlight update
update copyright date
update changelog
update description
update 1 author
update information
remove default
update affine
fix tests
use load_nifiti
normalize snr workflow
normalize positional args name
pep8
typo + pep8
replace Nifti1Image by save_nifti
replace Nifti1Image by save_nifti
fix typo
...
commit af2aef8d9c0d7a5bf95febec4c95a573cbaa9705
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sat Dec 22 21:56:23 2018 -0500
initial crack at python3- pkg, found uncomitted so probably incomplete
commit 3b682ffb18ba04ef8f63d165fbf9e7db341d4648
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue May 15 00:09:07 2018 -0400
build-depend on python-numpydoc
commit 5f835d414a43f1938ae7666ca0beb11feb0b384b
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon May 14 15:49:04 2018 -0400
minor fix for dh invocation
commit f4aada0c438ce2938048fcd98550a623e371b39a
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon May 14 15:45:14 2018 -0400
changelog, recythonized, debhelper boost to 9
commit 42e33cc1795137420285d988447562674b9b17a5
Merge: 8ea6d14a 3ba16b98
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon May 14 14:04:42 2018 -0400
Merge tag '0.14.0' into debian
Release 0.14.
* tag '0.14.0': (538 commits)
release setup
update authors
update and add all important information for the release
fix tests precision for test_whole_brain_slr.
remove range on plot and rotate odf_actor
improve some figure
life correction
syntax correction
rename bootstrap example file
replaced copy_point for newdir it is memory view
changed back np.full, not supported in numpy 1.7.1
RF - following copy_point(.) moved to fast_numpy
RF - moved the copy_point(.) to fast_numpy and used it for dgs
Minor issue corrected
Added RandomState inside RecoBundles
RF - uses np.full to generate bvals vector
RF - code clean up
DOC - fixed typos
RF - while to for loop
Corrected number of return objects if no neighbors are found
...
commit 8ea6d14ad3fe117b38ebf3058b771a989e1d75f9
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sat Nov 25 00:42:14 2017 -0500
debian/patches/1300.diff to mitigate failing tests on 32bit
commit 080bf2badfcaefc0b4e456ed3f73d88a44e98f62
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Nov 22 21:23:58 2017 -0500
debian/control - python-h5py was added to (Build-)Depends and python-tables was removed from Depends
commit 479bf9384645b3f8bd0dc69588aea2f60ca3acd5
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Nov 22 20:26:43 2017 -0500
cythonized and changelog
commit 7413db790c836e781bb94a4e4df6d549f4c6b5b3
Merge: 05e03071 25036c7c
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Nov 22 19:06:43 2017 -0500
Merge tag '0.13.0' into debian
Release 0.13.0
* tag '0.13.0': (165 commits)
Last commit before release 0.13.0
date update and adding last issue/PR
BF: Import Streamlines object directly from nibabel.
update release 0.13 information
remove comment on installation
update installation from source instructions
Anaconda typo change + link
add some dependency on issue template info
adding a citation
DOC: Add a coding style guideline.
adding some citations
small correction on issue template
adding issue template
add visual studio build tools on link names
update windows and osx instructions
switch references order
Update tracking_quick_start.py
Fix bug in default position
Replace build_textblock with constructor calls
Added parameters to the constructor of TextBlock2D
...
commit 05e03071e9d3a321d92297304bd3e22b2fc84192
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Jul 10 18:14:44 2017 -0400
BF: copy examples doc any doc-examples/ subdir, exclude test_fetcher tests
commit b5cf9815f127b0dbc57f48ef80040b4763e8c759
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Jul 3 23:28:21 2017 -0400
Fresh upstream release - upstream requires cython >= 0.25.1 for recythonization
commit 434d37d70cc89cf351889174883165c6cd92e8ea
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Jul 3 23:27:32 2017 -0400
recythonized
commit d68e2388f9793a3d7232eac9c8f4d294041afa9b
Merge: 2d3036ac 20a71d57
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Jul 3 21:19:22 2017 -0400
Merge tag '0.12.0' into debian
Release 0.12
* tag '0.12.0': (1296 commits)
Changed info.py to release 0.12.0
BF: added callbacks for sliders in viz_iu.py
Reduce precision error
Added two extra rows in Changelog
Replaced some names in release0.12.rst
More updates in mailmap
Updated mailmap too
Minor typo change
Updated release 0.12 file
Updated index.rst file
Updated api changes file
Updated Changelog
new release info (0.12.0)
DOC: quick start tracking tutorial done
DOC: using now new Streamlines API
Updated quick start tracking tutorial
DOC: updated examples_index.rst
small correction for debugging purpose on nlmeans
DOC: inferno
Remove duplicate code. Clean up some formatting.
...
commit 3dd9e2747b81e994f14295e91667664d28f8156a
Merge: 82cb7783 4ee6d49a
Author: Ariel Rokem <arokem@gmail.com>
Date: Mon May 30 20:04:50 2016 -0700
Merge pull request #1065 from sdorkenw/master
improve OMP parallelization with scheduling
commit 82cb7783d08dd30bda71adec443e459e2099f5f0
Merge: 9a9a4ecf a82cbb58
Author: Ariel Rokem <arokem@gmail.com>
Date: Mon May 30 20:04:21 2016 -0700
Merge pull request #1062 from MrBago/bf_csd_predict
BF - fix CSD.predict to work with nd inputs.
commit 4ee6d49a03474b512a6c1c912a9e38c717f3d1f7
Author: sdorkenw <sven.dorkenwald@mpimf-heidelberg.mpg.de>
Date: Fri May 27 22:58:30 2016 -0700
improve OMP parallelization with scheduling
Many jobs deployed by prange finish very quickly when using a mask. Since the default scheduling seems to assign jobs statically to workers by creation some worker run out of jobs quickly. I tested all possible settings with default parameters, num_threads=10 on a virtualized system on an HCP dataset (HCP/994273/T1w/Diffusion). The mask was computed with dipy and covers (=1) ~25% of the dataset.
Single runs, hence high variance, but the trend is pretty clear:
default: 1990s
guided: 1065s
dynamic: 1011s
static: 2077s
commit a82cbb58012ebc39584309f4628ed509dffe640f
Author: Bago Amirbekian <mrbago@gmail.com>
Date: Fri May 27 08:05:22 2016 -0700
BF - fix CSD.predict to work with nd inputs.
commit 9a9a4ecfae9c2717cf7c2b666e46c0a9e3994634
Merge: 43f99853 39de42a4
Author: Eleftherios Garyfallidis <garyfallidis@gmail.com>
Date: Mon May 23 19:07:39 2016 -0400
Merge pull request #1056 from MrBago/remove-tracking-interfaces
Remove tracking interfaces
commit 39de42a4f23f8eab87a5bf3ba166f55c8a89f7d6
Author: Bago Amirbekian <mrbago@gmail.com>
Date: Sun May 22 17:38:04 2016 -0700
RF: Remove tests for old module.
commit 2d6dea5b524a370519b3dbc964b696ee3fe29676
Author: arokem <arokem@gmail.com>
Date: Sun May 22 17:00:58 2016 -0700
Remove also tracking gui script in scripts directory.
commit 19649e337d0f532992ef99d946faa6cfb3fd2f65
Author: Bago Amirbekian <mrbago@gmail.com>
Date: Sun May 22 17:33:21 2016 -0700
RF: Remove more deprecated modules from dipy.tracking. Fixes #1037
commit cfd63872ae8ba12cc9ac2e48c19c51dc12739066
Author: arokem <arokem@gmail.com>
Date: Sat May 21 12:39:18 2016 -0700
RF: Remove deprecated interfaces module.
commit 43f998531ec6698ae62ddc1bc4e55315ba52860c
Merge: 888f8539 0d983253
Author: Rafael Neto Henriques <rafaelnh21@gmail.com>
Date: Tue May 17 16:08:04 2016 +0100
Merge pull request #1028 from arokem/predict-dki-volS0
BF: Predict DKI with a volume of S0
commit 888f8539b05fca08167f6f7186aa34a21bc5a4a6
Merge: f983d1f4 9d821705
Author: Ariel Rokem <arokem@gmail.com>
Date: Sat May 14 17:53:42 2016 -0700
Merge pull request #1041 from gabknight/NF_add_ODF_thresholding_for_tractography
NF - Add PMF Threshold to Tractography
commit f983d1f48b4d375af3e379d2ebb289cc469be7ba
Merge: aeaf595f 43e55ab7
Author: Ariel Rokem <arokem@gmail.com>
Date: Fri May 13 17:08:42 2016 -0700
Merge pull request #1039 from MrBago/doc_fix_shm_basis
Doc - fix definition of real_sph_harm functions
commit 43e55ab7d65ae7e4327b2d4eb0acdcc940ffd08a
Author: Bago Amirbekian <mrbago@gmail.com>
Date: Fri Apr 29 15:52:53 2016 -0700
Doc - fix definition of real_sph_harm functions
commit 9d821705408a35bc5c1aa5b48477b816b8e67340
Author: Gabriel Girard <girard.gabriel@gmail.com>
Date: Wed May 4 15:29:42 2016 -0400
DOC - updated api changes
commit e3ce0aa3271140b40995fa03e3ab6d385b030ee2
Author: Gabriel Girard <girard.gabriel@gmail.com>
Date: Wed May 4 11:55:17 2016 -0400
DOC - removed typo
commit a9d20e4ef840cd339bf6fa6f87b286f025dcc0e1
Author: Gabriel Girard <girard.gabriel@gmail.com>
Date: Wed May 4 11:44:28 2016 -0400
DOC - fixed comments
commit a3e65bd4cc06353d2cee41bc89d722c163f65c08
Author: Gabriel Girard <girard.gabriel@gmail.com>
Date: Tue May 3 13:19:20 2016 -0400
RF - update default value of pmf_threshold
commit 3a63f37f89881ed5ad654ea1b91bbcd4fb99a9b2
Author: Gabriel Girard <girard.gabriel@gmail.com>
Date: Tue May 3 11:55:29 2016 -0400
TST - pmf thresholding
commit 35df3c30f5a6c1da5dc67cb11166cbb2e9e417b4
Author: Gabriel Girard <girard.gabriel@gmail.com>
Date: Tue May 3 11:54:43 2016 -0400
fixed pmf thresholding
commit 98bb40313161ba702a9422247c6d141439ff317a
Author: Gabriel Girard <girard.gabriel@gmail.com>
Date: Tue May 3 10:45:33 2016 -0400
NF - added pmf_treshold parameter for probabilistic tractography
commit 0d983253f6073a2faa50feffd23f71b84cf729a5
Author: arokem <arokem@gmail.com>
Date: Wed Apr 13 17:24:31 2016 -0700
BF: Predict DKI signal with S0 as a volume.
commit c717e65fcd48061870789cdd545d8013026c3438
Author: arokem <arokem@gmail.com>
Date: Wed Apr 13 17:21:31 2016 -0700
BUG: Predicting from DKI with a volume of S0 raises an error.
commit 2d3036ac66dc40e74ce07c07667bb7fffb2bd3ff
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Feb 22 11:59:52 2016 -0500
bringing formatting back and adjusting proposed descriptions
commit dfb19a90b1d98d5e319712c7c9497f4a85767746
Merge: d19f1687 8e18c242
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Feb 22 11:53:34 2016 -0500
Merge remote-tracking branch 'gh-neurodebian/debian' into debian
* gh-neurodebian/debian:
Updated description for DIPY
commit 8e18c242389a5773e437da4fc72885f3626d1d99
Merge: 0242ea5a a7030c8f
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Feb 22 11:53:12 2016 -0500
Merge pull request #1 from Garyfallidis/debian
Updated description for DIPY
commit a7030c8f9ec4f582721d6f74e80899cafafc5702
Author: Eleftherios Garyfallidis <garyfallidis@gmail.com>
Date: Mon Feb 22 11:42:07 2016 -0500
Updated description for DIPY
commit d19f1687f9fab3da23f036cab0d77e1f84bf4a2c
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sun Feb 21 19:58:56 2016 -0500
boost policy to 3.9.7 (no extra changes)
commit 3fbf9b9b9eb41cc996c90bd54d25f17ca39c12a3
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sun Feb 21 19:57:42 2016 -0500
debian/control - changed Priority to extra to be inline with suite overrides
commit 0b4f1842db2fe6e3a33f77825fd98b213b273f26
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sun Feb 21 19:51:39 2016 -0500
refreshed patch
commit 457dbf0972f7922ff53f3374beea07e151e4cc65
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sun Feb 21 19:11:20 2016 -0500
Dropping patches which came from upstream for numpy/scipy compatibility workarounds + changelog
commit f7e1915686f0b3e43e70f1a87f05099d79e7f818
Merge: 0242ea5a bf4dfccd
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sun Feb 21 19:09:32 2016 -0500
Merge commit '0.11.0-2-gbf4dfcc' into debian (0.11.0 in releases branch)
* commit '0.11.0-2-gbf4dfcc': (208 commits)
Update version number for the release.
DOC: Remove ominous warning.
DOC: Update github stats for 0.11 as of today.
Updated dates
Update utils.py
fix typos
Fix PEP8 in top-level tests
fix typo
BF: cross platform path handling.
Improve readibility in test_expectmax
Fix PEP8 in test_expectmax
Small correction in examples-index
Updated developers
DOC: typos removed (and pep8)
Updated developers
DOC: corrected links and added some comments as requested at issue 900
Kurtosis example was missing from files, now added
RF: updated examples_index.rst
Minor check
Updated index.rst with new release info
...
commit bf4dfccd873890ec3cdbcff4013d8f1e20a3b457
Merge: d7a7e854 aedfb34b
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sun Feb 21 19:09:18 2016 -0500
Merge tag '0.11.0' into releases
Release 0.11
* tag '0.11.0': (208 commits)
Update version number for the release.
DOC: Remove ominous warning.
DOC: Update github stats for 0.11 as of today.
Updated dates
Update utils.py
fix typos
Fix PEP8 in top-level tests
fix typo
BF: cross platform path handling.
Improve readibility in test_expectmax
Fix PEP8 in test_expectmax
Small correction in examples-index
Updated developers
DOC: typos removed (and pep8)
Updated developers
DOC: corrected links and added some comments as requested at issue 900
Kurtosis example was missing from files, now added
RF: updated examples_index.rst
Minor check
Updated index.rst with new release info
...
commit aedfb34be08d4f5dc0b5bb55a2b2741b6a9ff9a7
Author: arokem <arokem@gmail.com>
Date: Sun Feb 21 10:29:53 2016 -0800
Update version number for the release.
commit 0242ea5aafc102a8293725726c31c42f20d06caf
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Feb 8 20:04:47 2016 -0500
debian/patches/up_numpy_compat-PR858.patch - for compatibility with numpy 1:1.11.0~b2
commit 7711cf0491546a97bc94e92bd8fd50a6e37c3e56
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue Feb 2 18:09:31 2016 -0500
refreshed patch and mandaed min numpy version to be 1.7.1
commit ce0813558c1bb39ef62629dd3318f7b371399b28
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue Jan 26 23:30:06 2016 -0500
refreshed patch, adjusted changelog for new release
commit d49908f5cf631b986934d3418bd5ec991cd89461
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue Jan 26 23:27:10 2016 -0500
recythonized for older backports
commit 7635a44b93419093e33508354a4863bf0b371471
Merge: b55dfeda d7a7e854
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue Jan 26 23:24:37 2016 -0500
Merge tag '0.10.1' into debian
Release 0.10.1
* tag '0.10.1': (970 commits)
Update changelog again. Set version number for the release.
TST: Add a test for TripWire.
DOC: Update minimum dependency for numpy, mailing list.
Bumping up to 0.10.1 for maintenance development.
Also - bumping to 0.10.1
BF: Tripwire subclass AttributeError.
TST: add Python 3.5 to travis-ci test matrix
Set version number for release.
Updated change log.
DOC: Clarification of Python 2/3 issues.
RF: Change streamtube default thickness so that they don't look awful.
BF: Import
TST: Also skip appropriately in viz.window.
TST: A couple more tests that need to be skipped with TEST_WITH_XVFB='skip'
DOC: More elaboration on different compiler options for MAC OSX.
DOC: Clarify the installation routes for clang/OMP on MAC OSX.
More specific about where to add compiler configuration.
Don't need nibabel source on PYTHONPATH (but needs to be installed).
DOC: Installation, added RNH to list of contributors.
TST: Make skipping with TEST_WITH_XVFB=skip more explicit.
...
commit b55dfeda3c507190ba11697cf00d549b70245d3a
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue Jan 26 22:53:38 2016 -0500
Let's try to build for sid and be done ;)
commit d7a7e8542626aa743b3a3c44fbeafa537fe7172c
Author: arokem <arokem@gmail.com>
Date: Fri Dec 4 14:42:05 2015 -0800
Update changelog again. Set version number for the release.
commit 39dde30b7a1571fd7fd39ef2c850f566004bac1c
Author: Michael Hanke <mih@debian.org>
Date: Wed Aug 26 21:21:14 2015 +0200
Include upstream patch to address one of the two test failures on sid
commit 81e40f5604095db334000523c7e63c90cec4a1c0
Author: Michael Hanke <mih@debian.org>
Date: Tue Aug 25 21:07:37 2015 +0200
Release to unstable
commit e17a813371f47597d6a1a5998a3ab20521227644
Author: Michael Hanke <mih@debian.org>
Date: Tue Aug 25 20:33:45 2015 +0200
Enable reproducible builds
commit f768afd57614e2e609deded6d473b8160f273d05
Author: Michael Hanke <mih@debian.org>
Date: Tue Aug 25 20:31:53 2015 +0200
Update maintainer email
commit cd90c9dc4dbe755313d8b6faae7582ee68f1528c
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Thu Mar 19 23:03:08 2015 -0400
debian/control - limit to python >= 2.7 to avoid problem while testing scripts while having two Python versions supported
(see https://github.com/nipy/dipy/issues/354#issuecomment-69251564)
commit b05bd4d8319b7151bbe02eea53ec87bf78132007
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Thu Mar 19 22:59:35 2015 -0400
cythonized and new changelog
commit 2a4e568a08a7e419c1c1e81e59fc21f669f303d3
Merge: 562a3c12 f35702c9
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Thu Mar 19 22:52:38 2015 -0400
Merge tag '0.9.2' into debian
Sixth public release
* tag '0.9.2': (209 commits)
Updated info and changelog
BF: moved cythonutils.h to src directory
Changed release to 0.9.1 because pypi didn't allow an update of 0.9.0
BF: added header file for cythonutils in setup.py
Updated info.py with release version
DOC: we're (spelled) big now.
DOC: Detailed github stats for 0.9
Removed the word new
Minor change in SFM in Changelog
Minor fixes in Changelog
Realise mode: updating Changelog and Authors
Use assert_array_almost_equal instead of assert_array_equal
BF: Some versions (<0.18) of numpy don't have nanmean.
BF: use dpy_rint instead of round for Windows
DOC: Add link to memory profiling.
Use int instead of float with except
DOC: Warn that computing this might require some memory.
RF: pyflakes.
RF: Comment out debugging statements.
RF: Back to arrays. Seems like the best way to go for now.
...
commit 562a3c12984fabbd0eb42a21232832e051701a40
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Jan 7 19:47:27 2015 -0500
fixed up paths to .so files and renamed to PACKAGE2_NAME so rm *.so works
commit 4b078496b973100720db61865121e58f4bf81e78
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Jan 7 18:29:02 2015 -0500
changelog and minor copyright tune ups
commit 84913df9347fbe635df77c4a9ba0b6046b0c6f65
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Jan 7 18:26:06 2015 -0500
trying to migrate away from pysupport to dh_python2
commit 2e3430f9ba42373f06e27715773cbe319056441d
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Jan 7 18:15:44 2015 -0500
updated cythonized files
commit 08383e50cb38d925f19c18d7b97dbc95e01f169c
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Jan 7 17:10:31 2015 -0500
changelog and enabling examples again
commit 616d014386eb09c1e62207d2c9f3ea85dfcc44f7
Merge: 93fd34ff 4f5dc204
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Jan 7 16:54:07 2015 -0500
Merge tag '0.8.0' into debian
A truly remarkable release
* tag '0.8.0': (26 commits)
Update changelog and info.py for 0.8 release
Some additions to the release notes.
Whitespace.
RF: integer division in making lattice grid
RF: adapt dipy test runner to possibility of mpl
BF+TST: fix sampling_shape again; fix smoke tests
DOC+RF: rewrite, expand docstrings, reformat
RF: add matplotlib rc file to disable figures
TST: Beginning some testing for regtools.
DOC+RF: add more comments to tests
RF+TST: use numpy approved data get / flag checks
DOC: more docstring fixes
remove unused mgrid variables from plot_2d_diffeomorphic_map
RF: remove unused inline functions
DOC: refactor propspeed docstrings / whitespace
plot_2d_diffeomorphic_map: only call savefig() if show_figure is True
regtools.py PEP8 formatting
auto-convert sampling_shape to an int32 array
NF: add requirements.txt file
RF: Apply the changes to EuDX to the life validation script.
...
commit 93fd34ff0358c329a4fd0842bc3a775b78d744f9
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue Dec 30 11:26:17 2014 -0500
debian/rules - clean away Cython generated files
commit 3b1370de0f3eda6e439a1bbef7f0b63b2bfdb277
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue Dec 30 11:23:05 2014 -0500
install any/all README.*s
commit 8b4553d0cd276be674039ee7ff6156e08e0f9398
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue Dec 30 01:39:05 2014 -0500
temporarily do not install examples
commit 7e2c1913db507e3d3d1ccaf0755a31dce4a9130c
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Dec 29 22:46:17 2014 -0500
reverting somehow managed to get in divergance from upstream in dipy/info.py
commit e261295bb239b30ddff8215ed25312b2073239d7
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Dec 29 22:40:41 2014 -0500
patches
commit f676c16aeaa12045ada87bfac1e223c2dba37d6b
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Dec 29 22:35:49 2014 -0500
changelog, bdepends, min cython, cythonization
commit 390352863a9ef58e06eb384f9e40c30f55de8d00
Merge: af30ed55 b048445d
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon Dec 29 22:24:44 2014 -0500
Merge commit '0.7.0-1225-gb048445' into debian
* commit '0.7.0-1225-gb048445': (40 commits)
RF: use get_include instead of get_info
PEP8: remove extra blank lines
BF: /MANIFEST flag no longer needed
BF: explicitly request manifest creation to msvc
RF: remove check_npymath
BF: check definition of signbit directly
BF: NPY_HAVE_DECL_SIGNBIT is true but _signgit is undefined in vc runtime
BF: add npymath info but remove the library from linking
Add needed subset of numpy functions and remove npymath library from linking
BF: work round ugly MSVC manifest bug
BF: add more robust travis installs
RF: add setup_helpers.py to MANIFEST.in
BF: make some test directories into packages
BF: include_dirs for Cython pyx release compiles
RF: write config.h rather than config.pxi file
NF: add safe openmp header / Cython pxd
Broke long sentence
Readme.rst and info.py update about the license
Update README.rst
Added shore gpl warning
...
commit af30ed554c409d97ba5c729b606483fd7b7b773b
Merge: af03dc8a 871108e9
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Thu Dec 25 16:09:38 2014 -0500
Merge commit '0.7.1+git1173-g871108e' into debian
* commit '0.7.1+git1173-g871108e': (972 commits)
DOC: updated api changes
TST: Reduce sensitivity on these tests.
TST: Increasing testing on life.
DOC: updated api changes
DOC: typo correction
RF - update deterministic tracking example
RF - changed tabs to spaces
DOC - fixed typos
DOC - fixed typos
DOC - added example for deterministic maximum direction getter
RF - renamed MaximumDeterministicDirectionGetter to DeterministicMaximumDirectionGetter
Added info explaining that reslice is replacing resample
BF + TST: Reinstated eig_from_lo_tri
DOC: added contents and highlighted new example sections
DOC: added proper reference link from tracking_quick_start to new tracking API
DOC: repositioned tracking quick start in examples_index
BF: another fvtk 5 to 6 incompatibility
DOC: Small fixes in documentation.
Minor corrections
TEST: added noise estimation checks when interpolation changes
...
commit af03dc8a1ef07dc75947f2af93b69c22afa4868c
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Wed Aug 13 10:18:54 2014 -0400
Exclude peaksFromModelParallel from testing for now due to obscure permission issue
commit 51df36fa623d1becc53bf0477d26245812c2b78e
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Tue Aug 12 22:03:13 2014 -0400
uploading as is with Andreas changes
commit 860455d02b6bbe9d75b776eedd35872c734c887d
Author: Andreas Tille <tille@debian.org>
Date: Thu Jul 31 14:52:11 2014 +0200
Move publication data where they belong to
commit 3ab280ab61bf945ad37e7fe22165b57774a27158
Author: Andreas Tille <tille@debian.org>
Date: Thu Jul 31 14:27:26 2014 +0200
As frequently discussed "Priority: optional" should be used (except for debug or data packages)
commit fd1c79ea95be4865763dd7bc7f3337a9a41b6278
Author: Andreas Tille <tille@debian.org>
Date: Thu Jul 31 14:26:34 2014 +0200
Set Vcs fields to anonscm.debian.org
commit 6a4854ae3eee54a2f57fa598f15b10915dfaaa53
Author: Andreas Tille <tille@debian.org>
Date: Thu Jul 31 14:22:42 2014 +0200
Fix DEP5 format specification
commit 482341bd96dcfb6368af348cac97ff93a2057050
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sun Jan 19 20:44:14 2014 -0500
adding up_AE_test_fixup_i386 to overcome test failures on 32bit
commit 37f84ecf8e4b11a7ee43eff1257e5c349afb817c
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Sun Jan 19 20:38:28 2014 -0500
updated cythonized files
commit d1454e5d7ce278c5122ea1ec728bb8a9e45635bc
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Fri Jan 17 13:52:24 2014 -0500
just use uscan to fetch the recent tarball release
commit cfc443d2993cc949a4f8fe1dbbeb4e4d18e040a5
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Fri Jan 17 09:45:37 2014 -0500
New upstream release -- dropping patches, boost policy
* New upstream release
* debian/patches
- dropping deb_interpreter_for_scripts_tests, changeset* patches --
adopted upstream
* debian/control
- boost policy to 3.9.5 (no further changes due)
commit c005afbe936c67bfaac3592a9779bd5888226c79
Merge: 7fb987d2 11d6aa48
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Fri Jan 17 09:37:18 2014 -0500
Merge tag '0.7.1' into debian
Fourth public release
* tag '0.7.1': (38 commits)
Updated version to 0.7.1
Updated Changelog and announcements
Corrected some rendering problems with the installation instructions
BF: more problems with path quoting in windows
BF: add .bat to windows script names
BF: quote python executable for windows scripts
BF: doctest example fixed in eudx.py
minor change
Changed order of parameters in script
BF: removed default sphere from EuDX
DOC: replaced Canopy with Anaconda in installation instructions
DOC: Fixes following comments from Stefan.
DOC: Link to easy_install.
DOC: Suggest using .exe installers instead.
DOC: we don't need dual targets. Caps taken care by the Sphinx.
DOC: Be little less gushing.
DOC: Formulation.
DOC: Some more details in installation instructions.
BF - callable response does not work and is not tested, taking it out for now so that it can be added back with tests and an example
DOC - better doc string for seeds_from_mask
...
commit 7fb987d2a14fb887f912bb0ecda31ff6deaa3c7b
Merge: c1f2a703 853ebccf
Author: Yaroslav Halchenko <debian@onerussian.com>
Date: Fri Jan 17 09:37:15 2014 -0500
Merge tag '0.7.0' into debian
Third public release
* tag '0.7.0': (780 commits)
Removed .dev from info.py
Updated info.py and copyright year
BF - change imports of urllib, urlparse for python3
BF - use urllib to turn path to url for better portability
Fixed typo.
Oh yes - we don't need itertools here anymore.
Import from six for py3k compatibility.
Added one-line description.
BF: Put back utils.length.
BF - forgot to read gtab for shore test
RF - reuse code for reading gradient table files and add taiwan dsi gradient table
TST - rework tests so that we do not need to download any data
PEP8.
More py2.6 compatibility.
Better explanation of value error
Extra safety
BF: copy with order not supported in older numpy of buildbots
BF: Deal with python2.6 issues.
Fixed snr estimation line
Removed some lines from README.txt because download all releases became unavailable in github
...
