jalview (2.7.dfsg-5) [PTS] [DDPO]

NEW: VCS has unreleased changes: 2.11.1.3+dfsg1-1 > 2.7.dfsg-5

Git: https://anonscm.debian.org/git/pkg-java/jalview.git
Enter a full Vcs-* header, supported schemes are: Vcs-Bzr, Vcs-Cvs, Vcs-Darcs, Vcs-Git, Vcs-Hg, Vcs-Mtn, Vcs-Svn.
For Vcs-Git append -b branch to select the branch name; append [subdir] if the debian/ directory is not in the repository root.
The next upload will reset the information from the source package headers.
Branch: master
Path: debian/changelog
Browser: https://anonscm.debian.org/cgit/pkg-java/jalview.git
Last scan: 2021-01-22 15:04:01+00
Error: The Vcs URL is using anonscm.debian.org. Please update it for the move to salsa.debian.org.
Next scan: 2021-01-23 16:44:00+00

Debian changelog in Git:

jalview (2.11.1.3+dfsg1-1) UNRELEASED; urgency=medium

  [ Pierre Gruet ]
  * New upstream version 2.11.1.3+dfsg (Closes: #849025)
  * New uploader (Closes: #897294)
  * Using version 4 in d/watch to remove files
  * Using secure URI in d/watch
  * Depending on debhelper-compat 13
  * Upstream has switched from ant to gradle
  * Correcting invocation of org.jfree
  * Get rid of quaqua, which cannot be distributed on a non-Mac platform
  * Calling JSONObject correctly
  * Deactivating getdown, which is used to update software while running
  * Removing call to classgraph, not needed for a Debian run
  * Updating build-dependencies list and d/jalview.classpath
  * Switching from cdbs to dh
  * Making the build with Maven instead of upstream's gradle
  * Updating Vcs-* and Homepage fields in d/control
  * Refreshing d/copyright
  * Bump Standards version to 4.5.1:
    - Providing a FreeDesktop entry instead of former menu entry
    - Rules-Requires-Root: no
    - Using the https form of the copyright-format URL
  * Modifying the jar launcher by setting properly the jar manifest
  * Putting the documentation in the resources tm embed it into the jar
  * Updating manpage
  * Deactivating Google Analytics, using a non-packaged and improperly licensed software
  * Adding autopkgtests

  [ Steffen Moeller ]
  * Reintroduced debian/upstream/edam file
  * Created debian/upstream/metadata
    - references to papers
    - references to registries
  * Added prior forgotten PMID in metadata
  * d/u/metadata: syntax fixed(?) and URLs added
  * Added ref to conda, RRID->SciCrunch

  [ Andreas Tille ]
  * d/rules: enforce LC_ALL=C.UTF-8 to cope with UTF-8 characters

 -- Pierre Gruet <pgtdebian@free.fr>  Tue, 15 Dec 2020 23:02:10 +0100

This branch is 55 commits ahead of tag debian/2.7.dfsg-5

Git log:

commit 659217a76d4392eec5eac5ebc26b350b6e7b8b6b
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Dec 17 12:44:47 2020 +0100

    Updating changelog

commit c9f30def1d4d765e5cca8ade89af1fa245d172ce
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Dec 17 12:16:16 2020 +0100

    Adding autopkgtests

commit 28a79175c4e5e9f0c5972c3a6454602da423a582
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Dec 17 12:15:57 2020 +0100

    Modifying files to care for a version number like ...+dfsg1

commit 17ea5ec200d76bb1edf879f88442e20024c052de
Merge: 8d73691 9245548
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Tue Dec 15 23:08:14 2020 +0100

    Update upstream source from tag 'upstream/2.11.1.3+dfsg1'
    
    Update to upstream version '2.11.1.3+dfsg1'
    with Debian dir 0e114cf2bd93fdf39d2c8542db8df52a19931c86

commit 9245548c4821c559b4d134ca7cb257085bc18722
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Tue Dec 15 23:07:52 2020 +0100

    New upstream version 2.11.1.3+dfsg1

commit 8d73691b1903ddb16327ccab04c64f46e04df730
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Tue Dec 15 23:06:56 2020 +0100

    Preparing files to reintegrate the examples/ folder in the source package

commit 2a985843cd91cc4bed830cf2d4311a81ebb4621f
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Tue Dec 15 23:06:22 2020 +0100

    Updating changelog

commit 14ef8756107778ae78c68dacc0bbe26866006b48
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 27 22:50:07 2020 +0100

    Acknowledging the two licences of files in src/jalview/ext/android

commit c492894f9bbc5d53878a0d717bcfb6e420c32515
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 26 21:55:25 2020 +0100

    Adding a jar of libjaxws-java in the classpath for the web services

commit 5000b090b62cc4accea5e9454df1cd1dbe4faace
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Wed Nov 25 22:08:33 2020 +0100

    Deactivating Google Analytics, using a non-packaged and improperly licensed software

commit 7aca93e0adaf89965a6ef71b5352245d1923be5e
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sun Nov 22 15:30:17 2020 +0100

    Adding metadata relative to Bug tracking and Repository

commit 67d8496565013dc8f506ddb14302ff2df3fa3aab
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sun Nov 22 15:29:47 2020 +0100

    Using secure URI in d/watch

commit 5931eec3e7ca33eeb2af5fced032f34283c0edb6
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 22:09:48 2020 +0100

    Correcting mispellings in manpage

commit d85f1dc445a1feeeb61e44c4345b689aa4eb95ad
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 22:08:59 2020 +0100

    Putting the documentation in the resources tm embed it into the jar

commit f258265f62d31a6c46876a73042d9daae542e955
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 14:57:23 2020 +0100

    Adding missing dependency libcommons-discovery-java

commit fdc74aae6f20e5bf0ec87ca38d7c2d8254321aea
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 14:33:23 2020 +0100

    Including an upstream patch for a test in MemorySettingTest.java

commit dd65224aa9aee2bb5e4dc47772e527ccc6ec588f
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 14:00:36 2020 +0100

    Adding missing libjersey1-core-java dependency

commit 4f3569097043969f4d4c5c7d5ba3e51da5d8ada3
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 14:00:10 2020 +0100

    Updating manpage

commit a04d9948e08415d1161e540a7abebae3f538d7f2
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 23:45:12 2020 +0100

    Modifying the jar launcher by setting properly the jar manifest

commit f8bed6dd512d121bc2418e724d04b86e707b14d9
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 22:51:30 2020 +0100

    Rules-Requires-Root: no, and acknowledging Standards version bump to 4.5.1

commit 9d9046d59afa65564f328fc274b6b81777c47fd0
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 22:50:17 2020 +0100

    Providing a FreeDesktop entry instead of former menu entry

commit 939cca8adde971d4c8410d9972cede05686fd310
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 17:17:52 2020 +0100

    Refreshing d/copyright

commit db8b77b87645d9d3093a2440b6f61fc46c644b73
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 11:26:29 2020 +0100

    Calling dh_clean in its override in d/rules

commit b0adab8a72ea120a4c414de9118bbef4c705c3b8
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 11:26:01 2020 +0100

    Setting myself as uploader, removing former uploader who orphaned jalview

commit 58a35c2470cb69c56d0bab6be262f8c41cf741e7
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 11:24:21 2020 +0100

    Remove patch for Jmol and ant

commit 8106b4f5ddde08e8b619fb0ac4db538c6d7b4edd
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 10:58:45 2020 +0100

    Updating Vcs-* and Homepage fields in d/control

commit 2a77c81a16c50383369c95b43e460a712d4c741a
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 18:55:56 2020 +0100

    Making the build with Maven instead of upstream's gradle

commit 47b335674745937b888222c339412df3f15b5009
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:46:35 2020 +0100

    Switching from cdbs to dh

commit 99421fab4e7c880a8dd849ea6bb7f74a57c320b7
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:43:47 2020 +0100

    Updating build-dependencies list and d/jalview.classpath

commit 0a2f4dc43440d5a39e28998ebdeedf9ebba7c202
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:22:00 2020 +0100

    Deactivate a failing corner-case assertion in a test

commit f3a97e9db3d88f6ccf2bc647040370c0a59a1276
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:20:44 2020 +0100

    classgraph is not needed for a Debian run

commit 2ae61807f9017af28983c9940eae7c86870536fa
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:19:53 2020 +0100

    Deactivating getdown, which is used to update software while running

commit a060eeae35a8529479ab770fad308f04c6c440c8
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:18:43 2020 +0100

    Calling JSONObject correctly

commit 1969b404be331ffed11a1b74aa7c02d014f51f15
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:17:35 2020 +0100

    Get rid of quaqua, which cannot be distributed on a non-Mac platform

commit ab9c2da24371370581964cde418624958689667a
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:16:51 2020 +0100

    Correct invocation of org.jfree

commit bb3a5751bf69418bba863bdf7972992609c4274b
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:06:10 2020 +0100

    Upstream has switched from ant to gradle

commit 38c143b18ff3881735000fd44b77d906e8eb6621
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:04:31 2020 +0100

    Depending on debhelper-compat 13

commit 8778e7b5f953ad161b21fa034664bbba2f2da4c1
Merge: 12c64ce a468480
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:03:18 2020 +0100

    Update upstream source from tag 'upstream/2.11.1.3+dfsg'
    
    Update to upstream version '2.11.1.3+dfsg'
    with Debian dir c80e10fc3578965b69064981dfa73553cddd7e73

commit a468480355446861b3aab267fefa71968d426bda
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:02:53 2020 +0100

    New upstream version 2.11.1.3+dfsg

commit 12c64cee95a1de080d8ab4fce60be5768f331e54
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 16:58:50 2020 +0100

    Using version 4 in d/watch to remove files

commit b26de480bf41735d88cbb412e2ec4f3ab3f7d41b
Author: Steffen Möller <moeller@debian.org>
Date:   Sat Sep 21 12:42:28 2019 +0000

    Added ref to conda, RRID->SciCrunch

commit 612ac7545dcc4dd8ac8e59950c7f1804412f5823
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Sep 6 20:15:21 2018 +0000

    d/u/metadata: syntax fixed(?) and URLs added

commit 7ebf5265cb3fabfc3b60b743f305c48e8fb6baeb
Author: Steffen Moeller <moeller@debian.org>
Date:   Sat Sep 16 02:33:35 2017 +0200

    Added prior forgotten PMID in metadata

commit 327a769216ec16e8fd441770145571400e6aa47c
Author: Steffen Moeller <moeller@debian.org>
Date:   Sat Sep 16 02:32:17 2017 +0200

    Added references to registries.

commit cb9eccd472bee2752afd80d3523eadd73cd3000a
Author: Steffen Moeller <moeller@debian.org>
Date:   Tue Jan 17 23:28:52 2017 +0100

    Corrected EDAM annotation file

commit ee58895d2192f1ea24aad4ea18b38fd6455dd1f4
Author: Steffen Moeller <moeller@debian.org>
Date:   Sun Jan 15 19:26:02 2017 +0100

    Corrected EDAM annotation file

commit 81d4ee52e92edd750383831611737d718d47a34f
Author: Steffen Moeller <moeller@debian.org>
Date:   Sun Jan 15 19:25:40 2017 +0100

    Corrected EDAM annotation file

commit 13c8123738745392311585912da6299833793d90
Author: Steffen Moeller <moeller@debian.org>
Date:   Sun Jan 15 19:24:39 2017 +0100

    Corrected EDAM annotation file

commit 8052be380667d6a62a565a31b666488660cc006d
Author: Andreas Tille <tille@debian.org>
Date:   Sun Dec 11 09:47:18 2016 +0100

    enforce LC_ALL=C.UTF-8 to cope with UTF-8 characters

commit f87e863f65a8903380e4405f253f3e3fc9c8cafc
Author: Ximin Luo <infinity0@debian.org>
Date:   Sat Dec 10 16:28:19 2016 +0100

    Use libbio4-java, add mkdir so building from git works

commit f6ce144f1ee9a52c39b164e3fbf896720bc861d9
Author: Ximin Luo <infinity0@debian.org>
Date:   Sat Dec 10 16:12:31 2016 +0100

    Update d/changelog, patches, and add some dependencies
    
    Others are not documented in Debian, added to d/TODO

commit e643aaa940725d05c9e2c5827d9b05f7bd0cdb6b
Merge: ef4e6f6 7eb4c6f
Author: Ximin Luo <infinity0@debian.org>
Date:   Sat Dec 10 16:11:32 2016 +0100

    Merge tag 'upstream/2.10.1.dfsg'
    
    Upstream version 2.10.1.dfsg
    
    # gpg: Signature made Sat 10 Dec 2016 16:11:29 CET
    # gpg:                using RSA key 3667486A326DB2766D255546860DEF3B8F650B79
    # gpg: Good signature from "Ximin Luo <infinity0@pwned.gg>" [ultimate]
    # gpg:                 aka "Ximin Luo <infinity0@torproject.org>" [ultimate]
    # gpg:                 aka "Ximin Luo <infinity0@freenetproject.org>" [ultimate]
    # gpg:                 aka "Ximin Luo <infinity0@debian.org>" [ultimate]
    # gpg:                 aka "Satoshi Nakamoto (www.bitcoin.org) <satoshin@gmx.com>" [ultimate]

commit 7eb4c6f9eac0c765349c6e1fdd249e1ff1055fa5
Author: Ximin Luo <infinity0@debian.org>
Date:   Sat Dec 10 16:11:25 2016 +0100

    New upstream version 2.10.1.dfsg

commit ef4e6f6352b4638610a2899c860d6e145dcb393a
Author: Steffen Moeller <moeller@debian.org>
Date:   Wed Jun 22 21:35:07 2016 +0200

    Reintroduced debian/upstream/edam annotation

commit 3415f678bf3068c41f3581aea21b41b731f9b044
Author: Michael R. Crusoe <crusoe@ucdavis.edu>
Date:   Sun Feb 7 12:25:06 2016 -0800

    Imported Upstream version 2.9+dfsg