kallisto (0.48.0+dfsg-4) [PTS] [DDPO]

NEW: VCS has unreleased changes: 0.51.1+dfsg-1 > 0.48.0+dfsg-4

Git: https://salsa.debian.org/med-team/kallisto.git
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Branch: master
Path: debian/changelog
Repo size: 1339392
Browser: https://salsa.debian.org/med-team/kallisto
Last scan: 2025-10-26 16:09:01+00
Next scan: 2025-11-01 14:31:00+00
CI pipeline status: failed

Debian changelog in Git:

kallisto (0.51.1+dfsg-1) UNRELEASED; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.7.2 (routine-update)
  * Add support for loongarch64 in d/control
    Closes: #1057131
  * Remove patch Check_busOptions.seq_length_before_accessing.patch that is
    missing from debian/patches/series.
  * Fix build with CMake 4
    Closes: #1113067
  * d/watch: version=5
  * Cleanup properly after build time test + fix clean target
    Closes: #1047324
  * debputy lint --auto-fix (routine-update)
  * Try hard to get bifrost build with recent gcc
  * bifrost: Add default values for MAX_KMER_SIZE and MAX_GMER_SIZE
  * Fix typo in bifrost

  [ Michael R. Crusoe ]
  * d/control: simplify architecture specifications by using provisions
    from the architecture-properties package.
  * d/rules: change dh_auto_test rule from an override to an
    execute_after to remove the need to check DEB_BUILD_OPTIONS.
  * Upstream has forked bifrost, use their copy instead.
  * d/rules: need cmake option needed: USE_BAM.

 -- Andreas Tille <tille@debian.org>  Sun, 13 Oct 2024 17:09:54 +0200

This branch is 46 commits ahead of tag debian/0.48.0+dfsg-4

Git log:

commit a756bc394a0ba520c40a27dc44d892afe5aaf118
Author: Andreas Tille <tille@debian.org>
Date:   Tue Oct 21 14:13:03 2025 +0200

    Pure debug change - should be removed later

commit 28b26efdbab3b2a1f37dd2097396773970e3c0eb
Author: Andreas Tille <tille@debian.org>
Date:   Tue Oct 21 14:12:30 2025 +0200

    Permit blhc failures

commit eb3612744deebbca640dae8282d4875f78e4cf9b
Author: Andreas Tille <tille@debian.org>
Date:   Tue Oct 21 11:24:05 2025 +0200

    Try really ugly hacks to get code (specificaly bifrost) building and ignore test suite errors

commit 3786de080c2e9d5726e9be40dab29ac8c6435662
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 20:58:33 2025 +0200

    Update use_debian_packaged_htslib.patch

commit fe0400cbaf82390710e86ba5961dc943234f79ed
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 18:32:48 2025 +0200

    Fix typo in bifrost

commit 992ad77d8e432142f41db77ad05aaecf791e1e93
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 18:10:10 2025 +0200

    bifrost: Add default values for MAX_KMER_SIZE and MAX_GMER_SIZE

commit f5e28c2fa5df516cddef62ccb18c9f4b29e58cc7
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 16:42:46 2025 +0200

    d/rules: work around gcc-15 build issue using std=gnu17

commit f67318d99b3689834ce2677933578fa92bcbb24e
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 11:59:46 2025 +0200

    debputy lint --auto-fix (routine-update)

commit 096fd9a5934b5ee5f29ac66cd8b7c633d29ef97d
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 11:54:34 2025 +0200

    Fix clean target

commit f63744bf6b12a99e30e261f2e8e4d1ef42e655a2
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 11:45:19 2025 +0200

    Cleanup properly after build time test Closes: #1047324

commit ef7a91b9509e8e67899ac470c83e8f44666457c6
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 11:42:36 2025 +0200

    Standards-Version: 4.7.2 (routine-update)

commit 78baf707df33e56065b0ddb48c3029a36435e712
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 11:42:01 2025 +0200

    d/watch: version=5

commit 72ff60faebbab43eba75e55fe393d88de42116a5
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 18 11:39:23 2025 +0200

    Fix build with CMake 4 Closes: #1113067

commit 84c31f65218466b3a00c0bff495fc1ed5e563935
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:19:34 2024 +0200

    Adapt patches

commit b24bfb4aa561dbd9eb4ce559ca0fd480e85102ee
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:18:55 2024 +0200

    Remove patch Check_busOptions.seq_length_before_accessing.patch that is missing from debian/patches/series.

commit ef34b105fbbd0d5307986975bc250c26d5cf08e2
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 15:10:01 2024 +0000

    Remove duplicate line from changelog.
    
    Changes-By: lintian-brush

commit a437f60a950b1763f8f4e1571e703ea785208aba
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:09:57 2024 +0200

    Standards-Version: 4.7.0 (routine-update)

commit 5b06a039aa45c3eb25468044fc601c8bacb6564d
Merge: a0ac45c fab07f2
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:09:57 2024 +0200

    Update upstream source from tag 'upstream/0.51.1+dfsg'
    
    Update to upstream version '0.51.1+dfsg'
    with Debian dir 2ef0c7f320c130718513472579aabb90837032e6

commit a0ac45c5cbefdea30ff46957c3fab4ba3cf5234b
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:09:54 2024 +0200

    New upstream version

commit fab07f24a5cda4169ead3ff23b32e73141203cfb
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:09:54 2024 +0200

    New upstream version 0.51.1+dfsg

commit 7d125706ac5f607a89e1b3fa6533f9c93b0a0919
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 12:10:13 2024 +0100

    d/rules: need cmake option needed: USE_BAM.

commit 148552cc96c32465412692022f64bcb03e740537
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:57:52 2024 +0100

    bifrost patch adjustments

commit 37dc5ba6a2ae346625f8bd3e4e2c17a3607e0b86
Merge: b15d94a ad903f0
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:45:00 2024 +0100

    Update upstream source from tag 'upstream/0.50.1+dfsg'
    
    Update to upstream version '0.50.1+dfsg'
    with Debian dir 893437f9425ba2b444ea04ad15920378d2d03720

commit ad903f064c3535dbd41d7f2aa1beb136d80ca2b5
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:44:56 2024 +0100

    New upstream version 0.50.1+dfsg

commit b15d94a157791022926b8cf3c86c8a09e25e7bb6
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:44:19 2024 +0100

    exclude generate HTML docs of bifrost

commit 04e967ee8174cb989a994e097a679260938c1f84
Merge: 5c69de5 f1dc2a4
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:42:18 2024 +0100

    Update upstream source from tag 'upstream/0.50.1+dfsg'
    
    Update to upstream version '0.50.1+dfsg'
    with Debian dir e1c4768a2595b84f0df81fcd64bf8e4180f0864b

commit f1dc2a4a0aa68efa1e4010ef5aadb9053acd741d
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:42:14 2024 +0100

    New upstream version 0.50.1+dfsg

commit 5c69de56085ebbcfd3fcace0325cf592d2099abe
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:40:54 2024 +0100

    Upstream has forked bifrost, use their copy instead.

commit 5cd86026997bdebf5c85930aa2156c2598836219
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:21:35 2024 +0100

    fix changelog

commit 9c2e7089547e88d209ccd52dbb08b33295103e10
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Thu Mar 7 12:31:17 2024 +0100

    d/control: fix type in architecture-properties provision name.

commit 4d93878527cea09e204c16f236fe7145123f015d
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Thu Mar 7 12:29:13 2024 +0100

    d/rules: change dh_auto_test rule from an override to an execute_after to remove the need to check DEB_BUILD_OPTIONS.

commit 678b7524140cfc68fa0d174981a1aa28037fe225
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Thu Mar 7 12:02:10 2024 +0100

    d/control: simplify architecture specifications by using provisions from the architecture-properties package.

commit 5f0bcfdce8ae35f264d644d4904489679d678f59
Merge: 32ac962 70e6823
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 15:07:47 2024 +0100

    Update upstream source from tag 'upstream/0.50.1+dfsg'
    
    Update to upstream version '0.50.1+dfsg'
    with Debian dir ec16b6b9a3f466e5b2de859ac29a518134040d31

commit 70e6823b6f7f953582b83037f01218d61f4e7512
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 15:07:44 2024 +0100

    New upstream version 0.50.1+dfsg

commit 32ac962fbb2796ef848685596adfe0779ed99ce0
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 15:03:54 2024 +0100

    Exclude code copy of bifrost

commit 287cfb6e5c03535bb6e34ddba1fd293a1ea6864c
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 15:03:26 2024 +0100

    Use Debian packaged bifrost

commit 128458b3f4a6f9bcf761be1a0aeaa1ea091a0e1c
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 09:23:58 2024 +0100

    libbifrost-dev is now available

commit 77c2ccdd09a745a244df51244593b525db7dcc6e
Author: Andreas Tille <tille@debian.org>
Date:   Fri Dec 1 13:29:15 2023 +0100

    Add new predepends

commit 833130c8eb8985ff40f3728b348bae5882ae75d3
Author: Andreas Tille <tille@debian.org>
Date:   Fri Dec 1 11:56:57 2023 +0100

    Add support for loongarch64 in d/control

commit 5af8a9689ea4e9a1211bbfc97e60f2d56c8f64d4
Author: Andreas Tille <tille@debian.org>
Date:   Thu Nov 9 06:59:36 2023 +0100

    Fix download name

commit 9188c763dacee7e01d5f03291aca106b58cd337d
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 11:43:12 2023 +0100

    Update patches

commit a7059c0afec7578c2438da062b4c41012af81d40
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 09:43:25 2023 +0100

    routine-update: Standards-Version: 4.6.2

commit 1ee4a608c6540abbab77126eec0a99e06597835d
Merge: 7205d80 9bdff6c
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 09:43:25 2023 +0100

    Update upstream source from tag 'upstream/0.50.1+dfsg'
    
    Update to upstream version '0.50.1+dfsg'
    with Debian dir b74632e6b822b1a732fbdfc2d207d73627c6695e

commit 9bdff6cf9920d4d420d92f3fc75576b144f51913
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 09:43:18 2023 +0100

    New upstream version 0.50.1+dfsg

commit 7205d8007d2dd6c8c7d86765e9074c268a7ea169
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 09:43:17 2023 +0100

    routine-update: New upstream version

commit c507a3e0a1b15eafb8ccb414300945f8d9bd7463
Author: Andreas Tille <tille@debian.org>
Date:   Wed Apr 12 08:34:03 2023 +0200

    Exclude i386 build from salsa ci