minexpert2 (8.2.0-1) [PTS] [DDPO]

COMMITS: VCS has seen 53 commits since the master/8.1.1-1 tag

Git: https://salsa.debian.org/debichem-team/minexpert2.git
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Branch: master
Path: debian/changelog
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Debian changelog in Git:

minexpert2 (8.2.0-1) unstable; urgency=low

  * New upstream version with a new low intensity threshold removal filter.

  * Updated the user manual.

  * Remove the docbook-mathml, libjeuclid-core-java, libjeuclid-fop-java,
    libjs-mathjax, fonts-mathjax, fonts-mathjax-extras, dependencies and add
    docbook-xml. That should fix the problem related to bug #994795.

  * Standards-Version: 4.6.0

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 19 Nov 2021 17:19:11 +0100

This branch is 53 commits ahead of tag master/8.1.1-1

Git log:

commit 9c0d242daccac38f02552e22dca3fa9d8fdb5ea0
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Feb 1 11:54:07 2022 +0100

    Add note about abandoning MathML stuff.

commit e3b195e3d2a2cf9880f75a5064cb1dbfa1a6e75e
Merge: ce4f014f e3907423
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Feb 1 11:42:57 2022 +0100

    Update upstream source from tag 'upstream/8.2.0'
    
    Update to upstream version '8.2.0'
    with Debian dir e1f53046705c018b7d5fb5a2795cc6157eaaae51

commit e3907423ea906da0f4d26bb492d6dce40b6ed0f7
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Feb 1 11:40:57 2022 +0100

    New upstream version 8.2.0

commit ce4f014fae376f99831df97723a3bc1b7744647c
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Feb 1 11:14:32 2022 +0100

    Continue removing unused packages that were intially intended to render MathML in PDF and HTML.

commit c2e609ea49b5b97d7f1b86aea55d913bb7ab5697
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Feb 1 11:13:50 2022 +0100

    Add some more history with new publication.

commit 4ae641c4829859723ed1512d1c2aa3594c41f89c
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Feb 1 11:13:34 2022 +0100

    Make sane build default.

commit e02c92d72bf70aa7e60acae89e488f6aa67c88ab
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Feb 1 10:38:24 2022 +0100

    Remove the docbook-mathml dependency and add the docbook-xml one.

commit 3265dcf347d3618ae93f8ea36a3fc5e061db2fc4
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Feb 1 10:35:04 2022 +0100

    Remove docbook-mathml from the packages required to build the user manual.

commit 8acad60f7c405f0e6d1fadd6fbbdfd506620e93a
Merge: 2c574e4f 86c97856
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Jan 31 17:49:41 2022 +0100

    Update upstream source from tag 'upstream/8.2.0'
    
    Update to upstream version '8.2.0'
    with Debian dir 797f68d2fe3d8a58d2954e0280f04ad50400e1ab

commit 86c97856324b8c127c37a2b75f871eb34b49370e
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Jan 31 17:47:42 2022 +0100

    New upstream version 8.2.0

commit 2c574e4f3021f68f40ac08df94a81b5a100ddadb
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Jan 31 17:36:08 2022 +0100

    Update release distrib to unstable.

commit b9a197fdf76fba9c7d078358f3ef92e1abfc267c
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Jan 31 17:35:20 2022 +0100

    Update the deps on libpappsomspp.

commit 5c7787676a3ab30bb2aa265c616df1755da8d33c
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Jan 31 15:53:37 2022 +0100

    Set to UNRELEASED the current 8.2.0 version.

commit d89d403f1fc595b48d51b6a4d37ffccf99a3f6c5
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Jan 31 15:53:11 2022 +0100

    Update the user manual with better screen dumps to illustrate the low intensity signal removal filter.

commit 069d3a3111574978cf9fe6a7b23b06c1f4e46701
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Jan 31 15:48:17 2022 +0100

    Remove non efficient filter from the menu.

commit a6360e3a7f52ac3e60ed9c0d54328a4ca325544c
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Jan 31 14:42:42 2022 +0100

    Fix typo.

commit edb20c2095a12ddcb5e9b5953e745e5a3bd17a66
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Jan 31 11:26:06 2022 +0100

    Add .ycm_extra_conf.py to .gitignore.

commit a3314791adff7c78175b4d1d01a6f883850691aa
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Wed Dec 8 17:30:23 2021 +0100

    Improve the build system when the libraries to be used are local and not system-wide.

commit 07776405ec00fee0c1f4e8b84a7e113db30fa754
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Wed Dec 8 17:29:20 2021 +0100

    Add a user-specific CMake build file.

commit 19b66b803263c947a71e1e8a718a57dcb8deec0e
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Nov 29 18:16:42 2021 +0100

    Remove compile_commands.json from the revision system.

commit e159ab8471b34bd766c08a822421e7bf9e89e59d
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Nov 29 18:15:23 2021 +0100

    New ms file reader that computes the TIC chromatogram. Work in progress. Will that file last long?

commit 40c2a418b97e6caebcb793472e197a62798cbf88
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Nov 29 18:14:08 2021 +0100

    Add one file.

commit cf8e9888df2dc23eb6a96321de6af23f5d16b315
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Nov 29 18:13:42 2021 +0100

    Improve the LOCAL_DEV paradigm to use the locally-built pappsomspp libs.

commit 4a6ba2447ec3b06546e1ffd6542e4bcfc9ba2d33
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Nov 23 18:33:26 2021 +0100

    Fix out-of-bounds error when freeing array of arrays of doubles.

commit f3ea412d58138243c8a8bf1dea22a7c037a112c4
Merge: 685e0c8d b0195304
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:45:21 2021 +0100

    Update upstream source from tag 'upstream/8.2.0'
    
    Update to upstream version '8.2.0'
    with Debian dir 5a0c91772011d56d71c9107c4281000658745e5e

commit b01953047f51f907ad252336e5cbaf8a52b8e48e
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:43:29 2021 +0100

    New upstream version 8.2.0

commit 685e0c8d12967015221659bac42268650afe0fa4
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:42:28 2021 +0100

    Fix path to the user manual file.

commit 9c6c68a3f00a912d4fd8cd75251643f095411d5f
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:31:56 2021 +0100

    Fix DC file name (user manual).

commit 2d8d1de50edad1cf53572ed606cbc1f2520ab692
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:24:07 2021 +0100

    Update Standards version to 4.6.0.

commit 0f89e091b6308a32814177f9c20931cd4a378c62
Merge: e489a251 418f76cc
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:22:22 2021 +0100

    Update upstream source from tag 'upstream/8.2.0'
    
    Update to upstream version '8.2.0'
    with Debian dir 740f9dcf1c7cef1f2adb88772f5098e8cd86d14e

commit 418f76cc09d25d9677d9f01c8b5347c877b8205f
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:20:26 2021 +0100

    New upstream version 8.2.0

commit e489a25159046992b4a7edbc7f3d70d333d20e13
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:20:10 2021 +0100

    Preparing new package version 8.2.0-1.

commit c3add6a73657fafdfc6fefc7c34aeda998803614
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:17:05 2021 +0100

    Add new section to the user manual
    
    The section documents the new low intensity threshold removal from traces.

commit 78a31c84d5d620c79972d5123df5ad4d81591ace
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Nov 19 17:15:42 2021 +0100

    Preparing new upstream version 8.2.0.

commit c2fa2139e1cd7abbda503f729b987af214ef1de9
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Sun Nov 7 19:07:11 2021 +0100

    New version of the watch file that points to the GitLab repos.

commit 2557c7a3bf2bea735429fa61ee3765efb7b4e8f8
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Oct 22 11:15:43 2021 +0200

    Add possibility to draw a ruler over all the composite plot widget of a plot window to control if peaks are at the same position.

commit 695ceb92d95a2e8fc7447ff8395a82b2a4ac8ff5
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Oct 22 11:14:45 2021 +0200

    Handle a user-provided sample noise trace.

commit d32a01bcbbeee07736baf87275a6e2143ecb53d2
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Oct 22 11:13:37 2021 +0200

    Comment out debug messages.

commit 7466e00ed59190228fc58038ddfdd6b63ffd6f74
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Fri Oct 22 11:13:03 2021 +0200

    Started the sample noise removal code.

commit 5d15477d6ab529cbe1adf716277acd954aeae2a6
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Oct 18 20:11:15 2021 +0200

    Ctrl+A selects all the row of the table view.

commit 5e16c1012b4e96583a56d74493d7b0a7b2ce6127
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Oct 11 18:08:09 2021 +0200

    Make sure we use the American English locale.

commit e52c5fe970808c2d13bd62023cbdf6966b722936
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Oct 11 11:00:01 2021 +0200

    Add Makefile to ease building while developing.

commit fa99a753f8c25b6483b127d88a58aaa6b9b84c6d
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Thu Oct 7 17:37:53 2021 +0200

    Implement the storage of the filters as a map relating the filter name and the filter shared pointer.

commit c6e1e6bebefc9bb8dfd6df70e503f4cc8670d5f9
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Sep 28 19:22:35 2021 +0200

    Add file to ease working with YouCompleteMe.

commit a94e1709609fb329a92f36c9affdbc7fc444d4bc
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Sep 28 19:05:28 2021 +0200

    The Qt bug was fixed.
    
    Gone back to the original implementation for initializing QVector with std vector iterators.
    Removed the #pragma GCC warnings that I had set long ago.

commit 28a8b33a2c1ffd8e0f787a5b19c49dce6bd4bddb
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue Sep 28 18:10:59 2021 +0200

    Implemented a vector of filters in ProcessingFlow.
    
    The idea is that it should be possible to store in the processing flow any number of filters.
    Then, upon need, a given filter might be applied _via_ its name.

commit 653e4ef56ccbe16440772ba108a010104ed1648d
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Mon Sep 20 17:56:13 2021 +0200

    Make sure we also take into account the fact the the user has unchecked the SavGol parameters checkbox.

commit dff511683ee7892d7f49fba6c44eb7697981dc49
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Thu Sep 16 15:57:58 2021 +0200

    Add provisions to use the local development libpappsomspp* libs.

commit c0f41283a1a3563aaa5a126580ce3c932bb360ea
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Wed Sep 15 18:44:23 2021 +0200

    New version.

commit a099f53253113d3cb5f6876b1409bd82ebab1ab2
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Wed Sep 15 17:36:50 2021 +0200

    Implement CMake-based .in file to configure the manual, in particular the location of the fop configuration file.

commit 841f5cd51e9dc3d21cdae00d089f0b7c39019057
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Wed Sep 15 17:32:15 2021 +0200

    Rename MAIN by removing useless minexpert2 string.

commit 4d87eb72ac05161822a0e38d339f33269300d09e
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Wed Sep 15 17:31:30 2021 +0200

    Add PHONY statements.

commit 2315785125cf5c732fe161a1fb35af175d3f597f
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date:   Tue May 4 14:36:53 2021 +0200

    Update gitlab repos upload script to account for read-write access token.