ncbi-igblast (1.19.0-1) [PTS] [DDPO]

NEW: VCS has unreleased changes: 1.20.0-1 > 1.19.0-1

Git: https://salsa.debian.org/med-team/ncbi-igblast.git
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Branch: master
Path: debian/changelog
Repo size: 356352
Browser: https://salsa.debian.org/med-team/ncbi-igblast
Last scan: 2024-11-21 01:19:14+00
Next scan: 2024-11-29 00:10:00+00
CI pipeline status: failed

Debian changelog in Git:

ncbi-igblast (1.20.0-1) UNRELEASED; urgency=medium

  [ Andreas Tille ]
  * Team upload.
  * Fix lintian-overrides
  * Recommends: ncbi-blast+
  * Install edit_imgt_file.pl and c++/src/app/igblast/internal_data
  * Build-Depends: libncbi-vdb-dev, drop --without-vdb option
  * Do a more targeted build using --with-flat-makefile
  * Standards-Version: 4.6.2 (routine-update)
  * Update lintian override info format in d/source/lintian-overrides on line
    4-6.

  [ Aaron M. Ucko ]
  * debian/igblast.install: Install correct build output.
  * debian/patches/avoid-gcc-crash.patch (new): Work around a consistent
    internal compiler error whose fix may run into the toolchain freeze:
    https://gcc.gnu.org/bugzilla/show_bug.cgi?id=108137
  * debian/rules:
    - Add possibly relevant subtrees to VDB_INCLUDE.
    - Enable optimization unless DEB_BUILD_OPTIONS contains noopt.
    - Copy-hack clean logic from ncbi-blast+.

  [ Michael R. Crusoe ]
  * build-dep on procps for the "ps" command.

 -- Aaron M. Ucko <ucko@debian.org>  Sun, 22 Jan 2023 13:39:13 -0500

This branch is 19 commits ahead of tag debian/1.19.0-1

Git log:

commit 727b720e6ef15b7a7a06fe352f57b3abd980b449
Author: Michael R. Crusoe <crusoe@debian.org>
Date:   Wed Feb 8 10:52:38 2023 +0100

    build-dep on procps for the "ps" command.

commit 3544c545c3932daf3404e73396fd7e27fc24f8a8
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Sun Jan 22 13:39:14 2023 -0500

    debian/igblast.install: Install correct build output.

commit 8932193af1cf759393bab4163209fb1a875a8480
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Fri Jan 20 17:30:48 2023 -0500

    debian/rules: Fix ifeq syntax.

commit 5dbd0ce570f921053441fb3c14d1274d8a827049
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Fri Jan 20 17:20:23 2023 -0500

    debian/rules: Copy-hack clean logic from ncbi-blast+.

commit 3ea3684a369cc4d9ad88041273ed7d3ddb5b5249
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Fri Jan 20 17:14:51 2023 -0500

    Enable optimization unless DEB_BUILD_OPTIONS contains noopt.

commit cdaf8ca508da57dad0c14fa143619e5eff03e291
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Fri Jan 20 17:10:25 2023 -0500

    debian/rules: Add possibly relevant subtrees to VDB_INCLUDE.

commit 7f9c4ebe015e7e42a311d568c84052886f31a3da
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Fri Jan 20 17:06:42 2023 -0500

    avoid-gcc-crash.patch (new): Work around a consistent ICE
    
    ... whose fix may run into the toolchain freeze:
    https://gcc.gnu.org/bugzilla/show_bug.cgi?id=108137

commit f1b140f84d26166d4fa75eb072276a3a118f092d
Author: Andreas Tille <tille@debian.org>
Date:   Thu Jan 19 20:56:00 2023 +0100

    Update lintian override info format in d/source/lintian-overrides on line 4-6.
    
    Changes-By: lintian-brush
    Fixes: lintian: mismatched-override
    See-also: https://lintian.debian.org/tags/mismatched-override.html

commit 0269475da931f33746fc6865d9e399478593b033
Author: Andreas Tille <tille@debian.org>
Date:   Thu Jan 19 20:55:53 2023 +0100

    routine-update: Standards-Version: 4.6.2

commit 235abb0d28d8440da6451787b2dcf077b28e9f7f
Merge: 4e73a25 b8c27a6
Author: Andreas Tille <tille@debian.org>
Date:   Thu Jan 19 20:55:52 2023 +0100

    Update upstream source from tag 'upstream/1.20.0'
    
    Update to upstream version '1.20.0'
    with Debian dir bdf20f26266179ce804f9702c2e02a3f433fc8e1

commit b8c27a6ed537f6e43d10388326a104c1c4b60e21
Author: Andreas Tille <tille@debian.org>
Date:   Thu Jan 19 20:53:57 2023 +0100

    New upstream version 1.20.0

commit 4e73a257b891c4bae28d9b5fbb3db7e255661b2e
Author: Andreas Tille <tille@debian.org>
Date:   Thu Jan 19 20:53:56 2023 +0100

    routine-update: New upstream version

commit 4d8bbf60775b3cec414670ec3851152bde62280d
Author: Andreas Tille <tille@debian.org>
Date:   Thu Aug 4 06:41:00 2022 +0200

    Commit what was supposed to work

commit b37949a7d94e590a26e6e72ffe5e0b6fce552f0f
Author: Andreas Tille <tille@debian.org>
Date:   Wed Aug 3 21:02:40 2022 +0200

    Try to adjust configure options

commit df2f1ccaf9bd67f8d48134ead4f4bcde200aacc2
Author: Andreas Tille <tille@debian.org>
Date:   Tue Aug 2 10:38:09 2022 +0200

    Follow hint of Aaron given here https://lists.debian.org/debian-med/2022/08/msg00005.html

commit c70ea988bf68ca4bfe761244cb585a8c27c671fe
Author: Andreas Tille <tille@debian.org>
Date:   Tue Aug 2 10:16:23 2022 +0200

    Build-Depends: libncbi-vdb-dev, drop --without-vdb option + add debug code

commit 1cc2481fd43655573efb3d4d18df8fc5a21715a8
Author: Andreas Tille <tille@debian.org>
Date:   Mon Aug 1 13:43:52 2022 +0200

    Install edit_imgt_file.pl and c++/src/app/igblast/internal_data

commit 54ca131f85f0910aad3ad056a2fd499f81951ccd
Author: Andreas Tille <tille@debian.org>
Date:   Mon Aug 1 13:38:40 2022 +0200

    Recommends: ncbi-blast+

commit 0dfecb5631d5ae763a51d97cd60ca1b4c6ccedd3
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jul 30 09:46:05 2022 +0200

    Fix lintian-overrides, review copyright