pyensembl (2.3.13-2) [PTS] [DDPO]

NEW: VCS has unreleased changes: 2.3.13-3 > 2.3.13-2

Git: https://salsa.debian.org/med-team/pyensembl.git
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Branch: master
Path: debian/changelog
Repo size: 581632
Browser: https://salsa.debian.org/med-team/pyensembl
Last scan: 2025-09-08 10:59:05+00
Next scan: 2025-09-14 06:58:00+00
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Debian changelog in Git:

pyensembl (2.3.13-3) UNRELEASED; urgency=medium

  * Need to remove tinytimer from resources.txt to avoid error message
    at runtime checking dependencies.
  * Standards-Version: 4.7.2

 -- Steffen Moeller <moeller@debian.org>  Fri, 01 Aug 2025 18:41:38 +0100

This branch is 1 commit ahead of tag debian/2.3.13-2

Git log:

commit 403939bc9e479d171253ced8b5eccba3cafc3cea
Author: Steffen Möller <moeller@debian.org>
Date:   Fri Aug 1 18:44:42 2025 +0100

    tinytimer - missed while executing command line
    
    $ pyensembl install --release 111 --species homo_sapiens
    Traceback (most recent call last):
      File "/usr/bin/pyensembl", line 33, in <module>
        sys.exit(load_entry_point('pyensembl==2.3.13', 'console_scripts', 'pyensembl')())
                 ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/usr/bin/pyensembl", line 25, in importlib_load_entry_point
        return next(matches).load()
               ~~~~~~~~~~~~~~~~~~^^
      File "/usr/lib/python3.13/importlib/metadata/__init__.py", line 179, in load
        module = import_module(match.group('module'))
      File "/usr/lib/python3.13/importlib/__init__.py", line 88, in import_module
        return _bootstrap._gcd_import(name[level:], package, level)
               ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
      File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
      File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
      File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
      File "<frozen importlib._bootstrap_external>", line 1026, in exec_module
      File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
      File "/usr/lib/python3/dist-packages/pyensembl/shell.py", line 43, in <module>
        import pkg_resources
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3661, in <module>
        @_call_aside
         ^^^^^^^^^^^
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3645, in _call_aside
        f(*args, **kwargs)
        ~^^^^^^^^^^^^^^^^^
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3674, in _initialize_master_working_set
        working_set = _declare_state('object', 'working_set', WorkingSet._build_master())
                                                              ~~~~~~~~~~~~~~~~~~~~~~~~^^
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 654, in _build_master
        ws.require(__requires__)
        ~~~~~~~~~~^^^^^^^^^^^^^^
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1066, in require
        needed = self.resolve(parse_requirements(requirements))
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 893, in resolve
        dist = self._resolve_dist(
            req, best, replace_conflicting, env, installer, required_by, to_activate
        )
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 934, in _resolve_dist
        raise DistributionNotFound(req, requirers)
    pkg_resource.DistributionNotFound: The 'tinytimer<1.0.0,>=0.0.0' distribution was not found and is required by pyensembl